View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18739_low_7 (Length: 308)
Name: NF18739_low_7
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18739_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 9647388 - 9647680
Alignment:
| Q |
1 |
ggacatgtgaaacctgaaaacaaattgcatagaaacatgacattaactcacattggttgcataaaatattaccataaa-aaatgtaaaccatacctccag |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9647388 |
ggacatgtgaaacctgaaaacaaattgcatagaaacatgacattaactcacattggttgcataaaatattaccataaataaatgtaaaccatacctccag |
9647487 |
T |
|
| Q |
100 |
tgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaagaagaatgctaccaactccacataatgtaaatct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9647488 |
tgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaagaagaatgctaccaactccacataatgtaaatct |
9647587 |
T |
|
| Q |
200 |
aacagaactgaaaataacaaaacataaaatgtgattttagttattcttctagaaatacttaaatggtatgcaacattaataaagtatataatg |
292 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9647588 |
aacataactgaaaataacaaaacataaaatgtgattttagttattcttctagaaatacttaaatggtatgcaacattaataaagtatataatg |
9647680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 9653405 - 9653697
Alignment:
| Q |
1 |
ggacatgtgaaacctgaaaacaaattgcatagaaacatgacattaactcacattggttgcataaaatattaccataaa-aaatgtaaaccatacctccag |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9653405 |
ggacatgtgaaacctgaaaacaaattgcatagaaacatgacattaactcacattggttgcataaaatattaccataaataaatgtaaaccatacctccag |
9653504 |
T |
|
| Q |
100 |
tgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaagaagaatgctaccaactccacataatgtaaatct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9653505 |
tgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaagaagaatgctaccaactccacataatgtaaatct |
9653604 |
T |
|
| Q |
200 |
aacagaactgaaaataacaaaacataaaatgtgattttagttattcttctagaaatacttaaatggtatgcaacattaataaagtatataatg |
292 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9653605 |
aacataactgaaaataacaaaacataaaatgtgattttagttattcttctagaaatacttaaatggtatgcaacattaataaagtatataatg |
9653697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 70 - 292
Target Start/End: Original strand, 9638401 - 9638623
Alignment:
| Q |
70 |
taccataaaaaatgtaaaccatacctccagtgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaagaag |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
9638401 |
taccataaaaaatgtaaaccatacctccagagtgtccaaagttgtgtctttcatcatcttgatctatacatgttaggaagacaaagccagacaaaagaac |
9638500 |
T |
|
| Q |
170 |
aatgctaccaactccacataatgtaaatctaacagaactgaaaataacaaaacataaaatgtgattttagtt-attcttctagaaatacttaaatggtat |
268 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | || |||||||||||||||| || |
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| T |
9638501 |
aatgccaccaactccacataatgtaaatctaacagaactgaaaataac-aaacataaaatgtgattttagttaaatattttagaaatacttaaatgacat |
9638599 |
T |
|
| Q |
269 |
gcaacattaataaagtatataatg |
292 |
Q |
| |
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|||| |||||| |||||||||||| |
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|
| T |
9638600 |
gcaatattaatgaagtatataatg |
9638623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 70 - 291
Target Start/End: Original strand, 9612952 - 9613176
Alignment:
| Q |
70 |
taccataaaaaatgtaaaccatacctccagtgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaagaag |
169 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||| |
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| T |
9612952 |
taccataaaaaatgtaaatcatacctccagtgcttccaaagttgtgtctttcatcatcttgatctatacatgttaggaagacaaagccagataaaagaag |
9613051 |
T |
|
| Q |
170 |
aatgctaccaactccacataatgtaaatctaacagaactgaaaataacaaaacataaaatgtgattttagtta-ttcttctagaaatacttaaatggtat |
268 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||| |||||| | || |
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| T |
9613052 |
aatgccaccaactccacataatgtaaatctaacagaactgaaaataacaaaacataaaatgtgattttagtgattttttttagaaatatttaaatagcat |
9613151 |
T |
|
| Q |
269 |
gcaacatta--ataaagtatataat |
291 |
Q |
| |
|
||||||||| ||||||| |||||| |
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| T |
9613152 |
gcaacattattataaagtgtataat |
9613176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 9626396 - 9626560
Alignment:
| Q |
70 |
taccataaaaaat-gtaaac-catacctccagtgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaaga |
167 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||| | ||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
9626396 |
taccataaaaaattgtaaacacataccttcagaatgtccaaagctgtgtcttgcattatcttgatctatacatgttaggaagacaaagccagacaaaaga |
9626495 |
T |
|
| Q |
168 |
agaatgctaccaactccacataatgtaaatctaacagaactgaaaataacaaaacataaaatgtga |
233 |
Q |
| |
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| ||||| ||||||||||||||||| ||||||||||||||||| | |||| | ||||||||||||| |
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| T |
9626496 |
acaatgccaccaactccacataatgcaaatctaacagaactgatagtaac-atacataaaatgtga |
9626560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 33645825 - 33645699
Alignment:
| Q |
89 |
catacctccagtgtttccaaagttgtgtcttgcatcatcttgatctatacatgttaggaagactaagccagacagaagaagaatgctaccaactccacat |
188 |
Q |
| |
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||||||||||| || ||||||| ||| ||||||||||||||||| ||||| ||||||||||| || ||||| | ||||||| ||| ||||||||||| |
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| T |
33645825 |
catacctccagagtgaccaaagtcgtgccttgcatcatcttgatccatacaggttaggaagacgaacccagaaacaagaagagtgcctccaactccacac |
33645726 |
T |
|
| Q |
189 |
aatgtaaatctaacagaactgaaaata |
215 |
Q |
| |
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|||| ||| | ||||||||||| |||| |
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|
| T |
33645725 |
aatgcaaagcgaacagaactgataata |
33645699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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