View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1873_high_3 (Length: 410)

Name: NF1873_high_3
Description: NF1873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1873_high_3
NF1873_high_3
[»] chr6 (16 HSPs)
chr6 (285-394)||(29100772-29100881)
chr6 (285-394)||(29062836-29062945)
chr6 (285-394)||(29117690-29117799)
chr6 (44-148)||(29915652-29915756)
chr6 (44-151)||(23936519-23936626)
chr6 (44-151)||(34439344-34439451)
chr6 (44-151)||(26669034-26669140)
chr6 (44-133)||(29927318-29927406)
chr6 (44-115)||(12828653-12828723)
chr6 (6-46)||(29914762-29914802)
chr6 (80-151)||(32258858-32258929)
chr6 (80-125)||(19689809-19689854)
chr6 (219-262)||(2810114-2810157)
chr6 (80-115)||(30627227-30627262)
chr6 (80-133)||(8052480-8052533)
chr6 (44-72)||(6992513-6992541)
[»] chr1 (34 HSPs)
chr1 (44-151)||(1430472-1430579)
chr1 (44-148)||(1428976-1429080)
chr1 (44-151)||(5317513-5317620)
chr1 (44-133)||(84472-84560)
chr1 (44-127)||(43105562-43105644)
chr1 (44-128)||(24040983-24041066)
chr1 (44-133)||(6332277-6332365)
chr1 (44-133)||(30006240-30006328)
chr1 (44-133)||(43929794-43929882)
chr1 (44-131)||(11650168-11650254)
chr1 (54-133)||(40060860-40060938)
chr1 (44-133)||(10690909-10690997)
chr1 (44-131)||(52403586-52403672)
chr1 (44-133)||(37437357-37437446)
chr1 (44-133)||(28751362-28751450)
chr1 (43-116)||(45749470-45749542)
chr1 (44-133)||(48259817-48259905)
chr1 (44-133)||(43755138-43755225)
chr1 (44-133)||(50349811-50349905)
chr1 (44-129)||(2245898-2245982)
chr1 (45-133)||(44583883-44583969)
chr1 (44-133)||(48319959-48320043)
chr1 (76-115)||(6377258-6377297)
chr1 (203-258)||(38040350-38040405)
chr1 (203-258)||(49944852-49944907)
chr1 (80-146)||(50158259-50158325)
chr1 (203-244)||(1811279-1811320)
chr1 (44-133)||(12002356-12002444)
chr1 (44-133)||(15698704-15698793)
chr1 (217-262)||(34662715-34662760)
chr1 (54-127)||(43738214-43738286)
chr1 (203-255)||(38834626-38834678)
chr1 (44-72)||(44582792-44582820)
chr1 (210-258)||(44939140-44939188)
[»] chr8 (27 HSPs)
chr8 (44-151)||(27109756-27109863)
chr8 (44-135)||(6839317-6839407)
chr8 (43-131)||(32737874-32737961)
chr8 (44-115)||(22601245-22601315)
chr8 (44-138)||(7612608-7612700)
chr8 (44-133)||(38329009-38329096)
chr8 (44-133)||(9022506-9022594)
chr8 (209-262)||(13831430-13831483)
chr8 (44-151)||(2067810-2067916)
chr8 (80-131)||(24732093-24732144)
chr8 (44-115)||(30789045-30789115)
chr8 (44-131)||(36915475-36915561)
chr8 (44-147)||(11335979-11336075)
chr8 (209-262)||(24915239-24915292)
chr8 (44-133)||(45187250-45187338)
chr8 (80-127)||(2812921-2812968)
chr8 (44-115)||(41790113-41790183)
chr8 (80-138)||(32061408-32061466)
chr8 (44-133)||(11257650-11257737)
chr8 (44-133)||(32326679-32326767)
chr8 (209-252)||(3236355-3236398)
chr8 (80-133)||(3095467-3095520)
chr8 (203-244)||(10184639-10184680)
chr8 (203-240)||(10839782-10839819)
chr8 (209-258)||(42123040-42123089)
chr8 (44-72)||(8471369-8471397)
chr8 (80-116)||(37185633-37185669)
[»] chr5 (25 HSPs)
chr5 (44-151)||(15400282-15400389)
chr5 (44-151)||(14979987-14980093)
chr5 (44-151)||(31557276-31557383)
chr5 (44-151)||(4967427-4967533)
chr5 (44-133)||(12167564-12167652)
chr5 (44-133)||(36660536-36660624)
chr5 (44-146)||(31889830-31889931)
chr5 (44-133)||(43257814-43257902)
chr5 (44-133)||(166603-166691)
chr5 (39-133)||(34919841-34919934)
chr5 (44-133)||(36783466-36783554)
chr5 (203-262)||(1138287-1138346)
chr5 (203-262)||(27488366-27488425)
chr5 (44-148)||(4011599-4011702)
chr5 (43-74)||(32963020-32963051)
chr5 (80-133)||(4371496-4371549)
chr5 (80-133)||(4751484-4751537)
chr5 (84-129)||(24436498-24436543)
chr5 (209-262)||(26327561-26327614)
chr5 (76-121)||(33741768-33741813)
chr5 (211-244)||(34297262-34297295)
chr5 (203-240)||(38394447-38394484)
chr5 (214-258)||(18473505-18473549)
chr5 (203-255)||(36434755-36434807)
chr5 (80-116)||(39059951-39059987)
[»] chr3 (33 HSPs)
chr3 (44-133)||(647546-647634)
chr3 (44-129)||(2567970-2568054)
chr3 (44-127)||(40048985-40049067)
chr3 (44-146)||(26965449-26965550)
chr3 (44-129)||(1340887-1340971)
chr3 (44-133)||(27483147-27483235)
chr3 (44-133)||(38457571-38457659)
chr3 (51-151)||(34059983-34060082)
chr3 (44-138)||(5244696-5244788)
chr3 (44-133)||(44648364-44648453)
chr3 (44-132)||(2662447-2662534)
chr3 (44-131)||(38165617-38165703)
chr3 (44-133)||(31290928-31291015)
chr3 (44-129)||(35239472-35239556)
chr3 (44-133)||(36771530-36771618)
chr3 (44-129)||(37225553-37225637)
chr3 (44-148)||(790183-790286)
chr3 (44-127)||(45095639-45095723)
chr3 (51-127)||(53716121-53716196)
chr3 (203-262)||(49885398-49885457)
chr3 (44-129)||(44854426-44854508)
chr3 (44-133)||(83406-83494)
chr3 (44-133)||(46362964-46363052)
chr3 (44-151)||(25061806-25061910)
chr3 (44-151)||(43600126-43600234)
chr3 (44-115)||(43736842-43736911)
chr3 (44-133)||(43580588-43580678)
chr3 (44-151)||(19552642-19552749)
chr3 (80-127)||(4392041-4392088)
chr3 (203-262)||(29457909-29457968)
chr3 (203-258)||(54537462-54537517)
chr3 (203-244)||(5177853-5177894)
chr3 (80-133)||(42857045-42857098)
[»] chr2 (36 HSPs)
chr2 (44-151)||(4840663-4840769)
chr2 (44-133)||(24775299-24775387)
chr2 (44-151)||(40410553-40410659)
chr2 (44-133)||(7743511-7743599)
chr2 (44-129)||(34225860-34225944)
chr2 (44-129)||(1298738-1298822)
chr2 (44-133)||(40987236-40987324)
chr2 (44-112)||(1381849-1381916)
chr2 (44-133)||(37106972-37107062)
chr2 (44-151)||(4766153-4766254)
chr2 (44-115)||(36360347-36360417)
chr2 (44-133)||(14378202-14378290)
chr2 (44-151)||(43460883-43460986)
chr2 (80-133)||(44228611-44228664)
chr2 (44-132)||(11171853-11171940)
chr2 (51-130)||(29795156-29795234)
chr2 (203-258)||(32457287-32457342)
chr2 (203-262)||(45571049-45571108)
chr2 (203-262)||(45574716-45574775)
chr2 (203-262)||(45578383-45578442)
chr2 (203-262)||(45582050-45582109)
chr2 (203-262)||(45585717-45585776)
chr2 (203-262)||(45589384-45589443)
chr2 (203-262)||(45593051-45593110)
chr2 (203-262)||(45596718-45596777)
chr2 (203-262)||(45600385-45600444)
chr2 (203-262)||(45604052-45604111)
chr2 (203-262)||(45607719-45607778)
chr2 (203-262)||(45611386-45611445)
chr2 (203-262)||(45615053-45615112)
chr2 (209-255)||(7943516-7943562)
chr2 (212-255)||(9152456-9152499)
chr2 (77-115)||(6592098-6592136)
chr2 (203-240)||(28249025-28249062)
chr2 (212-249)||(38449021-38449058)
chr2 (212-244)||(12486080-12486112)
[»] chr4 (38 HSPs)
chr4 (44-130)||(34360112-34360197)
chr4 (44-138)||(43421076-43421169)
chr4 (43-135)||(32140941-32141032)
chr4 (44-151)||(34096123-34096229)
chr4 (44-151)||(56422938-56423044)
chr4 (44-149)||(52732698-52732802)
chr4 (44-135)||(51737277-51737365)
chr4 (44-128)||(39671068-39671151)
chr4 (44-115)||(37445767-37445837)
chr4 (44-151)||(44855351-44855457)
chr4 (44-127)||(51930683-51930765)
chr4 (44-133)||(21045240-21045328)
chr4 (44-133)||(36805407-36805495)
chr4 (44-129)||(45520419-45520503)
chr4 (44-133)||(54512130-54512218)
chr4 (44-115)||(15501129-15501199)
chr4 (44-133)||(42672496-42672584)
chr4 (44-127)||(19849191-19849273)
chr4 (56-151)||(31817138-31817232)
chr4 (203-262)||(55190736-55190795)
chr4 (56-138)||(3093467-3093548)
chr4 (45-133)||(56556236-56556320)
chr4 (80-133)||(29840197-29840250)
chr4 (203-243)||(16412253-16412293)
chr4 (44-128)||(38761788-38761871)
chr4 (60-151)||(50072374-50072467)
chr4 (209-244)||(10306456-10306491)
chr4 (203-262)||(20459310-20459369)
chr4 (44-126)||(29289852-29289936)
chr4 (44-99)||(35928596-35928650)
chr4 (203-262)||(47866055-47866114)
chr4 (83-133)||(30492865-30492915)
chr4 (80-129)||(45903377-45903426)
chr4 (203-240)||(53225736-53225773)
chr4 (210-250)||(13051801-13051841)
chr4 (44-72)||(17499732-17499760)
chr4 (203-255)||(23226969-23227021)
chr4 (44-72)||(54233925-54233953)
[»] chr7 (34 HSPs)
chr7 (44-133)||(34002086-34002175)
chr7 (44-140)||(18886756-18886851)
chr7 (44-133)||(3680877-3680965)
chr7 (44-133)||(17869348-17869436)
chr7 (44-148)||(36447550-36447653)
chr7 (44-148)||(41905874-41905977)
chr7 (44-125)||(34733420-34733500)
chr7 (44-127)||(28044101-28044183)
chr7 (44-115)||(42259521-42259591)
chr7 (56-129)||(26527356-26527428)
chr7 (77-116)||(30833066-30833105)
chr7 (203-258)||(36245450-36245505)
chr7 (212-262)||(16861540-16861590)
chr7 (44-129)||(33056242-33056327)
chr7 (44-98)||(40207379-40207432)
chr7 (44-133)||(32275306-32275394)
chr7 (50-126)||(32873127-32873203)
chr7 (44-128)||(22627313-22627396)
chr7 (203-262)||(27231903-27231962)
chr7 (203-258)||(28677391-28677446)
chr7 (203-258)||(45533249-45533304)
chr7 (203-244)||(4925910-4925951)
chr7 (209-262)||(28020070-28020123)
chr7 (80-133)||(40298984-40299037)
chr7 (44-109)||(42010553-42010617)
chr7 (44-133)||(42121653-42121741)
chr7 (44-72)||(6521930-6521958)
chr7 (44-72)||(10684843-10684871)
chr7 (203-255)||(19512750-19512802)
chr7 (44-72)||(26963592-26963620)
chr7 (214-258)||(30869260-30869304)
chr7 (214-254)||(35443624-35443664)
chr7 (203-255)||(37491288-37491340)
chr7 (217-257)||(43174318-43174358)
[»] scaffold0072 (1 HSPs)
scaffold0072 (44-129)||(12040-12123)
[»] scaffold0119 (1 HSPs)
scaffold0119 (44-151)||(1653-1759)
[»] scaffold0580 (2 HSPs)
scaffold0580 (50-151)||(1690-1790)
scaffold0580 (50-151)||(9429-9529)
[»] scaffold0238 (1 HSPs)
scaffold0238 (44-133)||(15994-16081)
[»] scaffold0189 (1 HSPs)
scaffold0189 (80-133)||(13022-13075)
[»] scaffold0194 (1 HSPs)
scaffold0194 (80-151)||(8294-8365)
[»] scaffold0009 (1 HSPs)
scaffold0009 (218-250)||(18452-18484)
[»] scaffold0002 (1 HSPs)
scaffold0002 (212-244)||(423336-423368)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 29100772 - 29100881
Alignment:
Q  285 tagattctttcttaatatggaaggaggacagatattaatatatcatgctggttgagagtgttccaggggttgcataagcttatgtttgatgatttgttga 384  Q
    ||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29100772 tagatcctttcttagtatggtaggaggccagatattaatatatcatgctggttgagagtgttcaaggggttgcataagcttatgtttgatgatttgttga 29100871  T
Q  385 atatggaaat 394  Q
    ||||||||||    
T  29100872 atatggaaat 29100881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 29062836 - 29062945
Alignment:
Q  285 tagattctttcttaatatggaaggaggacagatattaatatatcatgctggttgagagtgttccaggggttgcataagcttatgtttgatgatttgttga 384  Q
    ||||| |||||||| ||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29062836 tagatcctttcttagtatggtaggaggccatatattaatatatcatgctggttgagagtgttcaaggggttgcataagcttatgtttgatgatttgttga 29062935  T
Q  385 atatggaaat 394  Q
    ||||||||||    
T  29062936 atatggaaat 29062945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 29117690 - 29117799
Alignment:
Q  285 tagattctttcttaatatggaaggaggacagatattaatatatcatgctggttgagagtgttccaggggttgcataagcttatgtttgatgatttgttga 384  Q
    ||||| |||||||| ||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29117690 tagatcctttcttagtatggtaggaggccacatattaatatatcatgctggttgagagtgttcaaggggttgcataagcttatgtttgatgatttgttga 29117789  T
Q  385 atatggaaat 394  Q
    ||||||||||    
T  29117790 atatggaaat 29117799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 29915652 - 29915756
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    |||| |||||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||    
T  29915652 tttatgtttgtctttttcttataaagtaaatggcagtttagtaaaagtgttatttctaattattatttcattcaatttcttaatatgtgtgccaacacct 29915751  T
Q  144 aaaac 148  Q
    |||||    
T  29915752 aaaac 29915756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 23936626 - 23936519
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||| |||    
T  23936626 tttaaatttgtttttttcttataaagtaaagggcaattcagtaaaaatgttatatctaatgattatttcattccatttcttaatatgtgtcccaacacct 23936527  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  23936526 aaaacgac 23936519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 34439451 - 34439344
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    |||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||  |||||||||| | |||  |||| |||    
T  34439451 tttatgtttgtctttttcttataaaataaagggcaatttaataaaaatgttatatctaatgattatttcatttcatttcttaatttatgtgtcaacacct 34439352  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  34439351 aaaacgac 34439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 26669140 - 26669034
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||  |||||||| ||| |||||||||||  |||||||||||| ||| | || ||||    
T  26669140 tttaattttgtctttttcttataaagtaagg-gcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatctttgtgctaaagcct 26669042  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  26669041 aaagcgac 26669034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 29927318 - 29927406
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||||||| |   |  |||||||||||||||| |||||| |||||||||||| |||| |||||||||||    
T  29927318 tttaagtttgtctttttcttataaagtaaggat-atgttagtaaaagtgttatgtctaatgattatttcattctattttttaatctgtgt 29927406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 12828723 - 12828653
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    |||||| |||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |||||||||||    
T  12828723 tttaagcttgtctttttcttataaagtaagg-gcagtttagtaaaagtgttatgtctaatgattatttcatt 12828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 29914762 - 29914802
Alignment:
Q  6 agaagcaaaggtgtccattaattgaaatgtagctattattt 46  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  29914762 agaagcaaaggtgtccattaattgaaatatagctattattt 29914802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 32258858 - 32258929
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcctaaaacgac 151  Q
    ||||||||||| |||||||| ||| ||||||||| || ||||||||||||||||  ||| ||||||| ||||    
T  32258858 tttagtaaaagcgttatatccaatgattatttcaatcgatttcttaatctgtgtgtcaaagcctaaagcgac 32258929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 19689854 - 19689809
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttctta 125  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||    
T  19689854 tttagtaaaattgttatatctaataattatttcattccatttctta 19689809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 2810114 - 2810157
Alignment:
Q  219 tttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    |||||||||||||| ||||||||||| | |||||||||||||||    
T  2810114 tttttagattcattcaataattgatgtacctagtctagaaatag 2810157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 30627227 - 30627262
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcatt 115  Q
    |||||||||||||||||||||||| |||||||||||    
T  30627227 tttagtaaaagtgttatatctaatgattatttcatt 30627262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 8052480 - 8052533
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||| |||||||||||| |||||| |||||||||||  |||||||||| |||||    
T  8052480 tttaataaaagtgttatgtctaatgattatttcatttcatttcttaatttgtgt 8052533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 6992513 - 6992541
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  6992513 tttaagtttgtctttttcttataaagtaa 6992541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 1430579 - 1430472
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||    
T  1430579 tttaagtttgtctttttcttataaagtaaagtgcagtttagtaaaagtgttatatctaattattatttcattaaatttcttaatctgtgtgccaacacct 1430480  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  1430479 aaaacgac 1430472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 1428976 - 1429080
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |||  |||| |||    
T  1428976 tttaagtttgtccttttcttataaagtaaagggcagtttagtaaaagtgttatatctaataattatttcattcaatttcttaatatatgtgtcaacacct 1429075  T
Q  144 aaaac 148  Q
    |||||    
T  1429076 aaaac 1429080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 5317620 - 5317513
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||| |||||||||||  ||| |||||||| ||||| |  ||||    
T  5317620 tttaagtttgtctttttcttataaaataaggggcaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctatgtactattgcct 5317521  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  5317520 aaaacgac 5317513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 84560 - 84472
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||||||| |  || ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  84560 tttaagtttgtctttttcttataaagtaagga-cattttagtaaaagtgttatgtctaatgattatttcattcaattccttaatctgtgt 84472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 43105644 - 43105562
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||||||||||||||||||||||| ||| | | ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  43105644 tttaagtttgtctttttcttataaaataatg-gtaatttagtaaaagtgttatgtctaatgattatttcattcaatttcttaat 43105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 24041066 - 24040983
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatc 128  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |||||||||||| ||| |||||||    
T  24041066 tttaagtttgtctttttcttataaagtaagg-gcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatc 24040983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 6332277 - 6332365
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||| ||||||||||||| ||||||  |||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  6332277 tttatgtttgtctttttcatataaaacaaag-gcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaatttgtgt 6332365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 30006240 - 30006328
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||| ||||||||||||||||||| | |||||||||||| |||||||| |||||| ||||||||||||||||  |||||||||||    
T  30006240 tttaaatttatctttttcttataaagtaa-gagcaatttagtaatagtgttatgtctaatgattatttcattcaattcattaatctgtgt 30006328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 43929794 - 43929882
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||| |||||||||||||||||||| | | | | ||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  43929794 tttaagttagtctttttcttataaagtaatg-gaagtatagtaaaagtgttatgtctaatgattatttcattcaatttcttaatttgtgt 43929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 11650168 - 11650254
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgt 131  Q
    |||||||||||||||||||| |||||||| | ||| |||||||||| |  ||||||||||  ||||||||||||||||||||||||||    
T  11650168 tttaagtttgtctttttcttttaaagtaagg-gcagtttagtaaaaatactatatctaatggttatttcattcaatttcttaatctgt 11650254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 40060938 - 40060860
Alignment:
Q  54 tctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||  |||||||||| |||||    
T  40060938 tctttttcttataaagtaagg-gcaatttagtaaaagtgttatgtctaatcattatttcatttcatttcttaatatgtgt 40060860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 10690997 - 10690909
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||||||  |||||| | ||| |||||||||| ||||||||||||| |||||||||||  |||||||||| |||||    
T  10690997 tttaagtttgtctttttcttacgaagtaa-gtgcagtttagtaaaaatgttatatctaatgattatttcatttcatttcttaatatgtgt 10690909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 52403586 - 52403672
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgt 131  Q
    ||||| |||||||||| |||||||||||| | ||| |||| ||| ||||||||||| ||| |||||||||||| ||||||||||||||    
T  52403586 tttaattttgtcttttccttataaagtaagg-gcagtttaataacagtgttatatccaatgattatttcattccatttcttaatctgt 52403672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 37437446 - 37437357
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagt-aaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||| | |||||||||  ||| |||||| |||||    
T  37437446 tttaagtttgtctttttcttataaagt-aagggcaatttagtaaaaagtgttatgtctaatgaatatttcatttcattccttaatatgtgt 37437357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 28751450 - 28751362
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||| |||||||||||||||| | ||| |||||||||| |||||| |||||| ||||||| |||  ||| ||||||||||||    
T  28751450 tttaagtttgtccttttcttataaagtaagg-gcagtttagtaaaaatgttatgtctaatgattattttatttcattccttaatctgtgt 28751362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 45749542 - 45749470
Alignment:
Q  43 atttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattc 116  Q
    |||||||||||||||||||||||||||| ||| ||  ||||||||||||||||| |||||| ||||||| ||||    
T  45749542 atttaagtttgtctttttcttataaagt-aagggcggtttagtaaaagtgttatgtctaatgattattttattc 45749470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 48259905 - 48259817
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||| |||||||||||||||| || | ||| |||| |||||||||||| |||||  |||||||||||| ||| ||||||||||||    
T  48259905 tttaagtttatctttttcttataaagcaagg-gcagtttaataaaagtgttatgtctaacgattatttcattctattccttaatctgtgt 48259817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 43755138 - 43755225
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||||||| |||| ||| || |||||||||||||||| | | ||||||||||||||||| |||   ||||||||||    
T  43755138 tttaagtttgtctttttcttattaagt-aagggcgatttagtaaaagtgtt-tttttaattattatttcattccattctgtaatctgtgt 43755225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 50349905 - 50349811
Alignment:
Q  44 tttaagtttgtctttttcttataa------agtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||      ||||| | ||| ||||||||||||||||| |||||| |||||||||||| ||| |||||| |||||    
T  50349905 tttaagtttgtctttttcttataattataaagtaagg-gcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatttgtgt 50349811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 2245898 - 2245982
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    |||||||||||||||||||||||||| || |  || |||||||||| | |||| | |||| |||| ||||||| ||||||||||||    
T  2245898 tttaagtttgtctttttcttataaaggaatg-acagtttagtaaaaatattatgtttaatgattacttcattccatttcttaatct 2245982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 44583883 - 44583969
Alignment:
Q  45 ttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||||||||| |||   ||| ||||| |||| |||||| |||||| ||||||| |||  |||||||||| |||||    
T  44583883 ttaagtttgtctttttcttataaaataa--ggcagtttaggaaaattgttatgtctaatgattattttatttcatttcttaatttgtgt 44583969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 48320043 - 48319959
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||| | ||||||||| ||| |||||||||||||||| |||| |||||| |    ||||||| |||||||||| |||||    
T  48320043 tttaagtttgtctttcttttataaagt-aagggcaatttagtaaaagtcttatgtctaatga----ttcattccatttcttaatatgtgt 48319959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 6377297 - 6377258
Alignment:
Q  76 gcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  6377297 gcaatttagtaaaagtgttatgtctaatgattatttcatt 6377258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 38040405 - 38040350
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||| |||| ||||||||||||||||||| | ||||||||| |||| ||||||||    
T  38040405 ataagaaaaatttgactttttagattcattgattaattgatgtatcttgtctagaa 38040350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 49944852 - 49944907
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||||    
T  49944852 ataagaaaaatttaactttttagattcattgaataattgatgtatcttgtctagaa 49944907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 50158325 - 50158259
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcctaaa 146  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||  ||| |||||||    
T  50158325 tttagtaaaagtgttatatccaatgattattgcattatatttcttaatctatgtgtcaaagcctaaa 50158259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 1811320 - 1811279
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatg 244  Q
    ||||| ||||||| | ||||||||||||||||||||||||||    
T  1811320 ataagcaaaaattcattttttagattcattaaataattgatg 1811279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 12002356 - 12002444
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||| ||||||  || | ||| |||||||||||| |||| ||| || |||||||||||  ||| |||||| |||||    
T  12002356 tttaagtttgtctttttcatataaaacaagg-gcagtttagtaaaagtattatgtctgatgattatttcatttcattccttaatatgtgt 12002444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 15698793 - 15698704
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||| |||||||||||||||||| |  | | |||| | |||||||||| |||||| ||||||| |||  ||| |||||| |||||    
T  15698793 tttaagtttatctttttcttataaagtacatggtagtttatttaaagtgttatgtctaatgattatttaattttattccttaatttgtgt 15698704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 34662715 - 34662760
Alignment:
Q  217 actttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  34662715 actttttagattcattcaataattgatgtacctagcctagaaatag 34662760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 43738286 - 43738214
Alignment:
Q  54 tctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||||||||||||||||||| | | |||||||||| | |||| |||||| ||||||| |||  ||||||||||    
T  43738286 tctttttcttataaagtaaag-gtagtttagtaaaaatattatgtctaataattattttatttcatttcttaat 43738214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 38834626 - 38834678
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtcta 255  Q
    ||||| ||||||| | |||||||||||||||||||| ||||| || |||||||    
T  38834626 ataagcaaaaatttattttttagattcattaaataaatgatgtatatagtcta 38834678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 44582820 - 44582792
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  44582820 tttaagtttgtctttttcttataaagtaa 44582792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 44939188 - 44939140
Alignment:
Q  210 aaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    |||||||| |||||||||||||| | ||||||||| ||||| |||||||    
T  44939188 aaaattgattttttagattcattgagtaattgatgtatctaatctagaa 44939140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 27109863 - 27109756
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    |||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||| |||    
T  27109863 tttaagtttgtccttttcttataaagtaaaagacaatttagtaaaagtgttatatctaatgattatttcattctatttcttaatatgtgtgccaacacct 27109764  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  27109763 aaaacgac 27109756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 6839317 - 6839407
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtac 135  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||    
T  6839317 tttatgtttgtctttttcttataaagtaaag-gcaatttagtaaaagtgttatgtctaatgattatttcattccattttttaatctgtgtac 6839407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 32737874 - 32737961
Alignment:
Q  43 atttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgt 131  Q
    |||||||||| ||||||||||||||||||||| ||| ||||  |||||||||||||||||| | |||||||||||||||||||||||||    
T  32737874 atttaagtttttctttttcttataaagtaaagggcagtttaacaaaagtgttatatctaatga-tatttcattcaatttcttaatctgt 32737961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 22601245 - 22601315
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| ||||| |||||| |||||||||||    
T  22601245 tttaagtttgtctttttcttataaagtaaag-acaatttagtaaaagagttatgtctaatgattatttcatt 22601315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 7612608 - 7612700
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaa 138  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||| | |||||||| ||| |||||||||||| |||||||||||||||| ||||    
T  7612608 tttaattttgtctttttcttataaagtaagg-gcagtttagtaaa-gcgttatatccaatgattatttcattctatttcttaatctgtgtgccaa 7612700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 38329096 - 38329009
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||  ||||||||||| ||  | ||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||    
T  38329096 tttaagtttgtcttttgattataaagtaaggc--agtttagtaaaagtgttatgtctaatgattatttcattccattccttaatctgtgt 38329009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 9022506 - 9022594
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||| ||||||  || | ||| ||||||||||||||||| |||||| |||| ||||||| |||| |||||||||||    
T  9022506 tttaagtttgtctttttcatataaaacaa-gtgcagtttagtaaaagtgttatgtctaatgattaattcattccattttttaatctgtgt 9022594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 13831483 - 13831430
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  13831483 aaaaattgactttttagattcattaaataattgatgtatttagtctaaaaatag 13831430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 2067810 - 2067916
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| || ||||||| |||||||||||| | ||| |||| |||||| |||||||| ||| |||||||||||| |||||||||||| |||  ||| ||||    
T  2067810 tttaatttggtcttttccttataaagtaagg-gcagtttaataaaagcgttatatcaaatgattatttcattccatttcttaatctatgtgtcaaagcct 2067908  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  2067909 aaagcgac 2067916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 24732093 - 24732144
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgt 131  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  24732093 tttagtaaaagtgttatatccaatgactatttcattcaatttcttaatctgt 24732144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 30789045 - 30789115
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    ||||| ||||||||||||||||||||||| |  ||||||| |||||||||||| |||||| |||||||||||    
T  30789045 tttaaatttgtctttttcttataaagtaagga-caatttaataaaagtgttatgtctaatgattatttcatt 30789115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 36915475 - 36915561
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgt 131  Q
    |||||||||||||||||| ||||||  || | |||||||||||||| | |||| |||||| |||||||||||| ||| ||||||||||    
T  36915475 tttaagtttgtctttttcatataaaacaagg-gcaatttagtaaaaatattatgtctaatgattatttcattccattccttaatctgt 36915561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 11336075 - 11335979
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| |||||||||||||||||||||||       |||||||||||||||||||| |||  ||| ||||||  ||||||||||||||||  ||| ||||    
T  11336075 tttaattttgtctttttcttataaagtaa-------tttagtaaaagtgttatatcgaatggttacttcattacatttcttaatctgtgtgtcaaagcct 11335983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 24915292 - 24915239
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||||| |||||||||||||||||||||||||||| ||||||  |||||||||    
T  24915292 aaaaattaactttttagattcattaaataattgatgtatctagcttagaaatag 24915239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 45187338 - 45187250
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||||||||||  || |  || |||||||||||||| || |||||| |||||||||||  ||| ||||||||||||    
T  45187338 tttaagtttgtctttttcttataaaacaagga-cagtttagtaaaagtgtcatgtctaatgattatttcattatattccttaatctgtgt 45187250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 2812921 - 2812968
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  2812921 tttagtaaaagtgttatgtctaatgattatttcattcaattacttaat 2812968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 41790183 - 41790113
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    ||||| |||||||||||||||||||| ||||  ||||||| ||||||| |||| |||||| |||||||||||    
T  41790183 tttaaatttgtctttttcttataaagcaaaga-caatttaataaaagtattatgtctaatgattatttcatt 41790113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 32061466 - 32061408
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaa 138  Q
    ||||||||||||||||| ||| || |||||||| |||||||||||||| ||||| ||||    
T  32061466 tttagtaaaagtgttatgtctgatgattatttcgttcaatttcttaatatgtgtgccaa 32061408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 11257650 - 11257737
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||| ||||||||||| ||||| | | |||||||||| |||| | | |||| |||||||||||| |||||||||| |||||    
T  11257650 tttaagtttgtctgtttcttataaaataaag-gtagtttagtaaaaatgtt-tttttaataattatttcattccatttcttaatttgtgt 11257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 32326767 - 32326679
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| |||||||||||| ||||||  || | ||| ||||||||||||||||  |||||| |||||||||||  ||| ||||||||||||    
T  32326767 tttaaatttgtctttttcatataaaacaagg-gcagtttagtaaaagtgttacgtctaatgattatttcatttcattccttaatctgtgt 32326679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 3236355 - 3236398
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatgaatctagt 252  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||    
T  3236355 aaaaattgactttttaaattcattgaataattgatgtatctagt 3236398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 3095520 - 3095467
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||| |||| |||| |||||||||||| |||| ||||| |||||    
T  3095520 tttagtaaaagtgtcatatttaatgattatttcattctattttttaatttgtgt 3095467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 10184680 - 10184639
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatg 244  Q
    ||||| |||||| ||||||||||||||||| |||||||||||    
T  10184680 ataagaaaaaatcgactttttagattcattgaataattgatg 10184639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 10839782 - 10839819
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataatt 240  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  10839782 ataagaaaaaattgactttttagattcattgaataatt 10839819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 42123089 - 42123040
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    |||||||||||||||||||||||| | ||||| ||| |||| ||||||||    
T  42123089 aaaaattgactttttagattcattgagtaattaatgtatcttgtctagaa 42123040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 8471369 - 8471397
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  8471369 tttaagtttgtctttttcttataaagtaa 8471397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 37185669 - 37185633
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattc 116  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  37185669 tttagtaaaagtgttatgtctaatgattatttcattc 37185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 15400282 - 15400389
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    |||||||||  |||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||    
T  15400282 tttaagttttcctttttcttataaagtaaagggaattttagtaaaagtgttatatctaataattatttcattcaattttttaatctgtgtgccaacacct 15400381  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  15400382 aaaacgac 15400389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 14980093 - 14979987
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||| ||| |||||||||||||||| ||| |||||||||||| |||||||||||||||| |||| ||||    
T  14980093 tttaattttgtctttttcttataaagtaagg-gcagtttggtaaaagtgttatatccaatgattatttcattccatttcttaatctgtgtgccaaagcct 14979995  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  14979994 aaagcgac 14979987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 31557383 - 31557276
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||||||||||||||||||||||||||||| |   |||| ||||||| |||||| |||| |||||||||||| |||||||||| |||||| |||| |||    
T  31557383 tttaagtttgtctttttcttataaagtaaagggttgtttactaaaagtattatatttaatgattatttcattctatttcttaatatgtgtatcaacacct 31557284  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  31557283 aaaacgac 31557276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 4967533 - 4967427
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||  ||| ||||    
T  4967533 tttaattttgtcttttttttataaagtaagg-gcagtttagtaaaagcgttatatccaatgattatttcattccatttcttaatctgtgtgtcaaagcct 4967435  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  4967434 aaagcgac 4967427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 12167652 - 12167564
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||| | |||||||||||||||| | ||| ||||||||||||||| | |||||| ||||||||||||||||||||||| |||||    
T  12167652 tttaagtttgaccttttcttataaagtaagg-gcagtttagtaaaagtgttttgtctaatgattatttcattcaatttcttaatttgtgt 12167564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 36660536 - 36660624
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||||||| |  || ||||||||||||||||| |||||| |||||||||||  ||| ||||||||||||    
T  36660536 tttaagtttgtctttttcttataaagtaagga-cattttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 36660624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 31889830 - 31889931
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||| |||||| |||  |||||||  ||| |||||||||||| ||||||||||||||||  ||| ||||    
T  31889830 tttaattttgtctttttcttataaagtaagg-gcagtttagtgaaaacgttatattcaataattatttcattccatttcttaatctgtgtgtcaaagcct 31889928  T
Q  144 aaa 146  Q
    |||    
T  31889929 aaa 31889931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 43257902 - 43257814
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||| |||||| |||||||||||  |||  |||||||||||    
T  43257902 tttaagtttgtctatttcttataaagtaagg-gcagtttagtataagtgttatgtctaatgattatttcatttcattctttaatctgtgt 43257814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 166691 - 166603
Alignment:
Q  44 tttaagtttgtctttttcttataaagta-aagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||| |||||  || ||| ||| ||||||||||||||||| |||||| |||||||||||  ||| ||||||||||||    
T  166691 tttaagtttgtctttttcatataa--tacaagggcagtttagtaaaagtgttatttctaatgattatttcatttcattccttaatctgtgt 166603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 34919841 - 34919934
Alignment:
Q  39 tattatttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||||||| || ||| || ||| ||||||| |||  ||| ||||||||||||    
T  34919841 tattaattaagtttgtctttttcttataaagt-aagggcagtttagtaaaattgctatgtccaatgattattttatttcattccttaatctgtgt 34919934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 36783466 - 36783554
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| |||||||||||| ||  |||||| | |||||||||||||| |||||| |||||| |||||||||||  || |||||||||||||    
T  36783466 tttaaatttgtctttttcataacaagtaagg-gcaatttagtaaaaatgttatgtctaatgattatttcatttcatctcttaatctgtgt 36783554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 1138346 - 1138287
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||||| |||||| ||||||||||||||| ||| |||||| ||||||||||    
T  1138346 ataagaaaaaattgattttttaaattcattaaataattaatgtatctagactagaaatag 1138287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 27488366 - 27488425
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| | |||||||||||||| ||||||||||| |||||| ||||||||||    
T  27488366 ataagaaaaaattaattttttagattcattcaataattgatgtatctagcctagaaatag 27488425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 4011702 - 4011599
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||| ||||||||||||||| ||| | ||| ||||| ||||  |||||||| ||| ||||||| |||| |||||||||||| |||  ||| ||||    
T  4011702 tttaattttatctttttcttataaaataagg-gcattttagaaaaaacgttatatccaatgattatttgattccatttcttaatctatgtgtcaaagcct 4011604  T
Q  144 aaaac 148  Q
    |||||    
T  4011603 aaaac 4011599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 32963051 - 32963020
Alignment:
Q  43 atttaagtttgtctttttcttataaagtaaag 74  Q
    ||||||||||||||||||||||||||||||||    
T  32963051 atttaagtttgtctttttcttataaagtaaag 32963020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 4371496 - 4371549
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||| ||| |||||| |||||||||||| ||| |||||| |||||    
T  4371496 tttagtaaaagtgctatgtctaatgattatttcattccattccttaatttgtgt 4371549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 4751537 - 4751484
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||| |||||| |||||||||||  ||| |||||| |||||    
T  4751537 tttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtgt 4751484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 24436543 - 24436498
Alignment:
Q  84 gtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    |||||||||||||||||||| |||||||||||  ||| ||||||||    
T  24436543 gtaaaagtgttatatctaatgattatttcattttattccttaatct 24436498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 26327561 - 26327614
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||||| |||||||||||||||| ||||||||||| | ||| |||| ||||||    
T  26327561 aaaaattaactttttagattcattcaataattgatgtacctaatctaaaaatag 26327614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 33741768 - 33741813
Alignment:
Q  76 gcaatttagtaaaagtgttatatctaattattatttcattcaattt 121  Q
    |||||||||||||| || |||||||||| |||||||||||| ||||    
T  33741768 gcaatttagtaaaaatggtatatctaatgattatttcattccattt 33741813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 34297295 - 34297262
Alignment:
Q  211 aaattgactttttagattcattaaataattgatg 244  Q
    |||||||||||||||||||||||| |||||||||    
T  34297295 aaattgactttttagattcattaagtaattgatg 34297262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 38394447 - 38394484
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataatt 240  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  38394447 ataagaaaaaattgactttttagattcattgaataatt 38394484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 18473505 - 18473549
Alignment:
Q  214 ttgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||||||||||||||||| | ||||||||| |||| ||||||||    
T  18473505 ttgactttttagattcattgagtaattgatgtatcttgtctagaa 18473549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 36434807 - 36434755
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtcta 255  Q
    ||||| |||| || |||||||||||||||||| ||||||||| |||| |||||    
T  36434807 ataagaaaaatttaactttttagattcattaagtaattgatgtatcttgtcta 36434755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 39059951 - 39059987
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattc 116  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  39059951 tttagtaaaagtgttatgtctaatgattatttcattc 39059987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 647634 - 647546
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||| |||||||||||  ||||||||||||||||    
T  647634 tttaagtttgtctttttcttataaagtaagg-gcagtttagtaaaactgttatatctaatgattatttcatttcatttcttaatctgtgt 647546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 2568054 - 2567970
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||||||||||||||||||||||||||| |  || ||| |||||||||||||||||||| |||||||||||||||| ||||||||    
T  2568054 tttaagtttgtctttttcttataaagtaagga-catttttgtaaaagtgttatatctaatgattatttcattcaattccttaatct 2567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 40048985 - 40049067
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||| ||| ||||||    
T  40048985 tttaaatttgtctttttcttataaagtaaag-gcaatttaataaaagtgttatgtctaatgattatttcattccattccttaat 40049067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 26965550 - 26965449
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||||| |||||||| ||| |||||||||||  ||||||||||||||||  ||| ||||    
T  26965550 tttaattttgtctttttcttataaagtaagg-gcagtttagtaaaagcgttatatccaatgattatttcattttatttcttaatctgtgtgtcaaagcct 26965452  T
Q  144 aaa 146  Q
    |||    
T  26965451 aaa 26965449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 1340971 - 1340887
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    |||||||||||||||||||||||||||||||  || ||||| ||||||||||| ||||||||||||||||||| |||  |||||||    
T  1340971 tttaagtttgtctttttcttataaagtaaag-acactttagaaaaagtgttatgtctaattattatttcattccattctttaatct 1340887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 27483235 - 27483147
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||| |||||||||||  ||| |||||| |||||    
T  27483235 tttaagtttgtctttttcttataaagtaagg-gaaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatttgtgt 27483147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 38457571 - 38457659
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||| ||||||||| ||||||||| | ||| ||||||||||||||||| | |||| ||||||||||||||||||||||| |||||    
T  38457571 tttaagtttatctttttctaataaagtaatg-gcagtttagtaaaagtgttatgtgtaatgattatttcattcaatttcttaatttgtgt 38457659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 34059983 - 34060082
Alignment:
Q  51 ttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcctaaaacga 150  Q
    |||||||||||||||||||||| | | | ||||||||||   ||||||| |||||||||||||||| |||||||||||||||| |||| ||||||| |||    
T  34059983 ttgtctttttcttataaagtaagg-gtagtttagtaaaaactttatatccaattattatttcattccatttcttaatctgtgtgccaaagcctaaagcga 34060081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 5244696 - 5244788
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaa 138  Q
    ||||||||||| |||||||||||| |||||| | | |||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| ||||    
T  5244696 tttaagtttgtttttttcttataa-gtaaagag-actttaataaaagtgttatgtctaatgattatttcattcaatttcttaatatgtgtgccaa 5244788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 44648453 - 44648364
Alignment:
Q  44 tttaagtttgtcttttt-cttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||| || ||||||||||| ||| ||||||||||||||||| |||||| |||||||||||  ||| ||||||||||||    
T  44648453 tttaagtttgtcttttttctcataaagtaaag-gcagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 44648364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 2662534 - 2662447
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtg 132  Q
    ||||| ||||||||||||||||||| ||| | ||||||||||||||||||||| |||||| |||||||||||  |||  ||||||||||    
T  2662534 tttaaatttgtctttttcttataaaataagg-gcaatttagtaaaagtgttatgtctaatgattatttcatttgattctttaatctgtg 2662447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 38165703 - 38165617
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgt 131  Q
    ||||||||||||||||||||||||||| |||  || ||||||||||||||||| | |||| |||||||||||  ||| ||||||||||    
T  38165703 tttaagtttgtctttttcttataaagt-aaggacagtttagtaaaagtgttatgtttaatgattatttcattacattccttaatctgt 38165617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 31291015 - 31290928
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||| ||||||||| ||||| ||||| ||| ||||||||||||||||| |||||| |||||||||||  ||| ||||||||||||    
T  31291015 tttaagttt-tctttttctaataaaataaag-gcagtttagtaaaagtgttatgtctaataattatttcatttcattccttaatctgtgt 31290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 35239472 - 35239556
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||||||||||||||||||||||||| |||  || |||||||||| ||||||  ||||| ||||||| ||||||||| |||||||    
T  35239472 tttaagtttgtctttttcttataaagt-aaggacagtttagtaaaaatgttatgcctaatgattattttattcaattttttaatct 35239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 36771618 - 36771530
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||| ||| | ||| |||||||||| | |||| |||||| |||||||||||  |||||||||| |||||    
T  36771618 tttaagtttgtctttttcttataaaataa-gagcagtttagtaaaaatattatgtctaataattatttcattatatttcttaatatgtgt 36771530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 37225637 - 37225553
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||| ||||||||||||||||||||||| |  || |||||||||||| ||||||| ||| |||||||||||  ||||||||||||    
T  37225637 tttaattttgtctttttcttataaagtaagga-cagtttagtaaaagtattatatccaatgattatttcattgtatttcttaatct 37225553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 790183 - 790286
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| |||| |||||||||||||||||| | ||| ||||||||||| |||||||  ||| |||||||||||  |||||||||| |||||  ||| ||||    
T  790183 tttaattttgactttttcttataaagtaagg-gcagtttagtaaaagcgttatattcaatgattatttcattacatttcttaatatgtgtgtcaaagcct 790281  T
Q  144 aaaac 148  Q
    |||||    
T  790282 aaaac 790286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 45095639 - 45095723
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaa-gtgttatatctaattattatttcattcaatttcttaat 127  Q
    |||||||||||| |||||||||||||||| | ||| |||||||||| ||||||| | |||| |||||||||||| ||| ||||||    
T  45095639 tttaagtttgtccttttcttataaagtaaggggcattttagtaaaatgtgttatgtttaatgattatttcattccattccttaat 45095723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 53716121 - 53716196
Alignment:
Q  51 ttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    |||||||||||||||||||||| | ||| ||||||||||| |||||||| ||| |||||||||||  ||||||||||    
T  53716121 ttgtctttttcttataaagtaa-gagcagtttagtaaaagcgttatatccaatgattatttcatttcatttcttaat 53716196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 49885398 - 49885457
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| | |||||||||||||| ||||||||||| |||||||||||||||||    
T  49885398 ataagaaaaaattaattttttagattcattcaataattgatgtatctagtctagaaatag 49885457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 44854426 - 44854508
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||||||||| ||||||||||||||| ||| ||| ||||||||||||||  | |||||| ||||||||||||||||  |||||||    
T  44854426 tttaagtttgtatttttcttataaagt-aagggcagtttagtaaaagtgt--tgtctaatgattatttcattcaattcattaatct 44854508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 83406 - 83494
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||||||||||||| ||| | | ||||||||||||||| | |||||| |||| ||||||  ||| |||||| |||||    
T  83406 tttaagtttgtctttttcttataaagt-aagggtagtttagtaaaagtgttgtgtctaatgattaattcatttcattccttaatttgtgt 83494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 46363052 - 46362964
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||||| ||||||||||||||||| |  || |||||||||| |||||  |||||| |||||||||||||||| |||||| |||||    
T  46363052 tttaaatttgtatttttcttataaagtaagga-cagtttagtaaaaatgttaggtctaatgattatttcattcaattccttaatatgtgt 46362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 25061806 - 25061910
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    |||||||||||  |||||||||||||||| | | | ||||||||||||||||| |||||| |||||||||||  ||| |||||| ||||| | | || ||    
T  25061806 tttaagtttgt--ttttcttataaagtaagg-gtagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtgtgcaatcggct 25061902  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  25061903 aaaacgac 25061910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 43600234 - 43600126
Alignment:
Q  44 tttaagtttgtc-tttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcc 142  Q
    ||||| |||||| ||||| ||||||||||||| | | |||||||||| ||||||||||||| ||||||| |||  |||||||| | |  || ||||| ||    
T  43600234 tttaaatttgtcattttttttataaagtaaagggaagtttagtaaaaatgttatatctaataattattttatttcatttcttattatacgtgccaacacc 43600135  T
Q  143 taaaacgac 151  Q
    |||||||||    
T  43600134 taaaacgac 43600126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 43736911 - 43736842
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    ||||||||| ||||||||||||||| ||| | | | |||||||||||||||||||||||| |||||||||||    
T  43736911 tttaagttt-tctttttcttataaaataa-gagtagtttagtaaaagtgttatatctaatgattatttcatt 43736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 43580588 - 43580678
Alignment:
Q  44 tttaagtttgtctttttcttataaagta-aagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| |||||||||||| |||| |  | ||| ||| |||||||||| |||||||| |||| |||||||||||| ||| ||||||||||||    
T  43580588 tttaaatttgtctttttcatatataaaacaagggcagtttagtaaaaatgttatatgtaatgattatttcattctattccttaatctgtgt 43580678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 19552642 - 19552749
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagt-gttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcc 142  Q
    ||||| ||||| ||||||||||||||||| |  || ||||||||||   |||||||| ||| |||||||||||  |||||||||| ||||| |||| | |    
T  19552642 tttaattttgtatttttcttataaagtaagga-cagtttagtaaaaaacgttatatccaatgattatttcatttcatttcttaatttgtgtgccaaagtc 19552740  T
Q  143 taaaacgac 151  Q
    |||||||||    
T  19552741 taaaacgac 19552749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 4392041 - 4392088
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||||||||||||||| |||||| |||||||||||  ||||||||||    
T  4392041 tttagtaaaagtgttatgtctaataattatttcatttcatttcttaat 4392088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 29457968 - 29457909
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| |||| || |||||||||||||||| ||| ||||||| | |||||||||||||||    
T  29457968 ataagaaaaagttaactttttagattcattcaatgattgatgtacctagtctagaaatag 29457909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 54537462 - 54537517
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||| |||| ||||||||| ||||||||| | ||||||||| |||||||||||||    
T  54537462 ataagaaaaatttgacttttaagattcattgagtaattgatgtatctagtctagaa 54537517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 5177894 - 5177853
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatg 244  Q
    ||||| ||||||| |||||||||||||||| |||||||||||    
T  5177894 ataagaaaaaattaactttttagattcattcaataattgatg 5177853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 42857098 - 42857045
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||| |||||| |||||| |||||||||||  ||| ||||||||||||    
T  42857098 tttagtaaaaatgttatgtctaatgattatttcatttgattccttaatctgtgt 42857045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 4840769 - 4840663
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||||  |||||||| ||| |||||||||||| |||||||||| ||||| |||| ||||    
T  4840769 tttaattttgtctttttcttataaagtaagg-gcagtttagtaaaaacgttatatccaatgattatttcattccatttcttaatatgtgtgccaaagcct 4840671  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  4840670 aaaacgac 4840663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 24775299 - 24775387
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||  |||||| |||||    
T  24775299 tttaagtttgtttttttcttataaagtaa-gagcattttagtaaaagtgttatatctaatgattatttcattcaataccttaatttgtgt 24775387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 40410553 - 40410659
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||| |||| |||||| |||||||| ||| ||||| |||||| ||||||||||||||||  ||||||||    
T  40410553 tttaattttgtctttttcttataaagtaagg-gcagtttaataaaagcgttatatccaatgattatgtcattccatttcttaatctgtgtgacaacgcct 40410651  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  40410652 aaagcgac 40410659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 7743511 - 7743599
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||| || ||||||||||| ||||  |||||||||||    
T  7743511 tttaaatttgtctttttcttataaagtaagg-gcaacttagtaaaagtgttatatctgatgattatttcatttaattctttaatctgtgt 7743599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 34225860 - 34225944
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| | |||| |||||| |||||||||||  ||| ||||||||    
T  34225860 tttaagtttgtctttttcttataaagt-aagggcaatttagtaaaattattatgtctaatgattatttcatttcattccttaatct 34225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 1298822 - 1298738
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||  |||||||  ||| |||||||||||  ||||||||||||    
T  1298822 tttaattttgtctttttcttataaagtaagg-gcaatttagtaaaaacgttatattcaatgattatttcattttatttcttaatct 1298738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 40987324 - 40987236
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||| ||||||||||||||||||| |  |||||||||||||||||||| |||||| |||||||||||  ||| |||||| |||||    
T  40987324 tttaaatttatctttttcttataaagtaagga-caatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtgt 40987236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 1381849 - 1381916
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttc 112  Q
    ||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||| |||||| ||||||||    
T  1381849 tttaagtttttctttttcttataaagt-aagagcagtttagtaaaagtgttatgtctaatgattatttc 1381916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 37106972 - 37107062
Alignment:
Q  44 tttaagtttgtcttttt--cttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||| |||||||  |||||||||||| | ||||||||||||||||||| | || ||| |||||||||||| |||||||||| |||||    
T  37106972 tttaagtttttcttttttgcttataaagtaagg-gcaatttagtaaaagtgttgtgtcaaataattatttcattccatttcttaatgtgtgt 37107062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 4766254 - 4766153
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||| |  |||||||| ||| ||||||||     ||||||||||||||||||||| | ||    
T  4766254 tttaattttgtctttttcttataaagtaaag-gcagtttagtaataacgttatatccaatgattatttc-----atttcttaatctgtgtaccaaaggct 4766161  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  4766160 aaagcgac 4766153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 36360417 - 36360347
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    ||||||||| ||||||||||||||| ||| | ||| ||||||||||||||||| |||||| |||||||||||    
T  36360417 tttaagtttatctttttcttataaaataagg-gcagtttagtaaaagtgttatgtctaatgattatttcatt 36360347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 14378290 - 14378202
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||| ||||||||||||||||||| | ||| |||||||||||||||||||  ||| |||||||||||| |||  |||| ||||||    
T  14378290 tttaaatttatctttttcttataaagtaagg-gcagtttagtaaaagtgttatattaaatgattatttcattctattcattaaactgtgt 14378202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 43460883 - 43460986
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| |||||||||| |||||||||||| | ||| ||||||||||||||   ||| ||| |||||||||||| ||||||||| | |||| |||| || |    
T  43460883 tttaattttgtcttttccttataaagtaagg-gcagtttagtaaaagtgt---atccaatgattatttcattccatttcttaaaccgtgtgccaaagctt 43460978  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  43460979 aaaacgac 43460986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 44228611 - 44228664
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||| ||||    
T  44228611 tttagtaaaagtgttatatctaatgattatttcattccattttttaatccgtgt 44228664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 11171853 - 11171940
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtg 132  Q
    ||||||||||||||||||  ||||||| | |   ||||||||||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  11171853 tttaagtttgtctttttcgcataaagttaggat-aatttagtaaaagtgttatgtctattgattattttattcaatttcttaatttgtg 11171940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 29795234 - 29795156
Alignment:
Q  51 ttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctg 130  Q
    |||||||||||||||||| ||| | ||| |||||||||||| |||| |||||| |||||||||||| |||  ||||||||    
T  29795234 ttgtctttttcttataaaataagg-gcagtttagtaaaagtattatgtctaatgattatttcattccattcattaatctg 29795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 32457342 - 32457287
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| |||| ||||||||    
T  32457342 ataagaaaaatttgactttttagattcattaagtaattgatgtatcttgtctagaa 32457287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45571049 - 45571108
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45571049 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45571108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45574716 - 45574775
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45574716 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45574775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45578383 - 45578442
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45578383 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45578442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45582050 - 45582109
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45582050 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45582109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45585717 - 45585776
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45585717 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45585776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45589384 - 45589443
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45589384 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45589443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45593051 - 45593110
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45593051 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45593110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45596718 - 45596777
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45596718 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45596777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45600385 - 45600444
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45600385 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45600444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45604052 - 45604111
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45604052 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45604111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45607719 - 45607778
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45607719 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45607778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45611386 - 45611445
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45611386 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45611445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 45615053 - 45615112
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  45615053 ataagaaaaaattaactttttagattcattcaataattgatgtacctagcctagaaatag 45615112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 7943562 - 7943516
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatgaatctagtcta 255  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||    
T  7943562 aaaaattgactttttagattcattgaataattgatgtatcttgtcta 7943516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 9152499 - 9152456
Alignment:
Q  212 aattgactttttagattcattaaataattgatgaatctagtcta 255  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||    
T  9152499 aattgactttttagattcattgagtaattgatgtatctagtcta 9152456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 6592098 - 6592136
Alignment:
Q  77 caatttagtaaaagtgttatatctaattattatttcatt 115  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  6592098 caatttagtaaaagtgttatgtctaatgattatttcatt 6592136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 28249062 - 28249025
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataatt 240  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  28249062 ataagaaaaagttgactttttagattcattaaataatt 28249025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 38449058 - 38449021
Alignment:
Q  212 aattgactttttagattcattaaataattgatgaatct 249  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  38449058 aattgactttttaggttcattaaataattgatgcatct 38449021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 12486112 - 12486080
Alignment:
Q  212 aattgactttttagattcattaaataattgatg 244  Q
    ||||||||||||||||||||| |||||||||||    
T  12486112 aattgactttttagattcattgaataattgatg 12486080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 34360112 - 34360197
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctg 130  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||  ||| |||||||||    
T  34360112 tttaagtttgtctttttcttataaagtaagg-gcagtttagtaaaagtgttatatctaatgattatttcatttcattccttaatctg 34360197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 43421169 - 43421076
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaa 138  Q
    ||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||||| |||||||||| ||||| ||||    
T  43421169 tttaattttgtctttttcttataaagtaa-gagcaatttagtaaaagtattatatccaatgattatttcattccatttcttaatttgtgtgccaa 43421076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 32141032 - 32140941
Alignment:
Q  43 atttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtac 135  Q
    ||||| |||||||||||  ||||||||||  | ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  32141032 atttatgtttgtcttttgtttataaagtaggg-gcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaatctgtgtac 32140941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 34096123 - 34096229
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| |||||||||||  |||| ||||| ||||| | |  ||||    
T  34096123 tttaagtttgtctttttcttataaagtaagg-gcaatttagtaaaagtgttaagtctaatgattatttcatttcattttttaatttgtgtgcaattgcct 34096221  T
Q  144 aaaacgac 151  Q
    ||||||||    
T  34096222 aaaacgac 34096229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 56423044 - 56422938
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| || ||||||||||||||||||||||  || ||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||  ||| ||||    
T  56423044 tttaatttcgtctttttcttataaagtaaaga-cagtttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaaagcct 56422946  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  56422945 aaagcgac 56422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 52732698 - 52732802
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| |||||||||| |||||||||||| | ||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||| |||  ||| ||||    
T  52732698 tttaattttgtcttttccttataaagtaagg-gcagtttagtaaaagtgttatatccaatgattatttcattccattttttaatctatgtgtcaaagcct 52732796  T
Q  144 aaaacg 149  Q
    ||||||    
T  52732797 aaaacg 52732802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 51737365 - 51737277
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtac 135  Q
    ||||||||||||||||||  ||||||||| | | ||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||    
T  51737365 tttaagtttgtctttttc--ataaagtaagg-gtaatttagtaaaagtgttatgtctaattattatttcattctattccttaatttgtgtac 51737277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 39671151 - 39671068
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatc 128  Q
    ||||||||||| ||||||||||||||||||| | | ||||||||| ||||||| |||||| || ||||||||| |||||||||||    
T  39671151 tttaagtttgtttttttcttataaagtaaag-gtagtttagtaaatgtgttatgtctaatgataatttcattccatttcttaatc 39671068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 37445767 - 37445837
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |||||||||||    
T  37445767 tttaaatttgtctttttcttataaagtaagg-gcagtttagtaaaagtgttatgtctaatgattatttcatt 37445837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 44855351 - 44855457
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| |||||||||| |||||||||||| | ||| ||||||||||| |||||||  ||| |||||||||||| |||||||||| ||||| |||| || |    
T  44855351 tttaattttgtcttttccttataaagtaagg-gcagtttagtaaaagcgttatattcaatgattatttcattctatttcttaatttgtgtgccaaagcgt 44855449  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  44855450 aaagcgac 44855457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 51930683 - 51930765
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||| |||||| |||||||||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| ||||| ||||    
T  51930683 tttaattttgtcattttcttataaagtaagg-gcagtttagtaaaagcgttatatccaattattatttcattccatttcataat 51930765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 21045240 - 21045328
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||||||||||||||||||||||| | ||| |||| ||||||  ||||||| ||| |||||||||||| ||| ||||||||||||    
T  21045240 tttaattttgtctttttcttataaagtaagg-gcagtttaataaaagccttatatccaatgattatttcattccattccttaatctgtgt 21045328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 36805495 - 36805407
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||||||| |||||| ||| |  || ||||||||||||||||| |||||| |||||||||||  ||| ||||||||||||    
T  36805495 tttaagtttgtctttttcatataaactaagga-cagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 36805407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 45520503 - 45520419
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    |||||||||||||| ||||||||| |||| | |||  |||||||||||||||| |||||| ||||||| |||| ||||||||||||    
T  45520503 tttaagtttgtcttattcttataatgtaagg-gcagcttagtaaaagtgttatgtctaatgattattttattccatttcttaatct 45520419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 54512130 - 54512218
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| |||||| |||||||||||||||| | ||| ||||||||||  |||||||| |||||||||||||||  |||||||||| |||||    
T  54512130 tttaattttgtcattttcttataaagtaa-gagcagtttagtaaaaacgttatatccaattattatttcatttcatttcttaatatgtgt 54512218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 15501199 - 15501129
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    ||||||||||| ||||||||||||||| ||| ||| |||||||||| |||||| |||||| |||||||||||    
T  15501199 tttaagtttgtatttttcttataaagt-aagggcagtttagtaaaaatgttatgtctaatgattatttcatt 15501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 42672496 - 42672584
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||||||||||||||||||||||  | | | ||||||||||||||||| |||||| |||||||||||  ||| |||||| |||||    
T  42672496 tttaaatttgtctttttcttataaagtat-gagtagtttagtaaaagtgttatgtctaatgattatttcattatattccttaatttgtgt 42672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 19849191 - 19849273
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||||||||| |||||||||||||||  || ||| |||||||||| |||||||| |||| ||||||| |||  ||||||||||    
T  19849191 tttaagtttgtttttttcttataaagt-gagggcagtttagtaaaaatgttatatgtaataattattttatttcatttcttaat 19849273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 31817232 - 31817138
Alignment:
Q  56 tttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcctaaaacgac 151  Q
    ||||||||||||||||| | | | ||||||||||  |||||||| ||| |||||||||||| |||||||||| |||||  ||| ||||||| ||||    
T  31817232 tttttcttataaagtaagg-gaagtttagtaaaaacgttatatccaatgattatttcattccatttcttaatttgtgtgtcaaagcctaaagcgac 31817138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 55190795 - 55190736
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| ||||||||| |||||| ||||||| ||||||||||| |||||| ||||||||||    
T  55190795 ataagaaaaaattgattttttatattcattcaataattgatgtatctagcctagaaatag 55190736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 3093467 - 3093548
Alignment:
Q  56 tttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaa 138  Q
    |||||||||||||| || |  ||||||| | |||||||||| |||||| ||||||| ||||||||||||||||| ||| ||||    
T  3093467 tttttcttataaaggaagga-caatttaatgaaagtgttatgtctaatgattattttattcaatttcttaatctatgtgccaa 3093548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 56556320 - 56556236
Alignment:
Q  45 ttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||| |||||||||||||| || |   ||||||||||||||||||| |||||| |||   |||||||||| ||||||||||||    
T  56556320 ttaagtttgtatttttcttataaagcaaggat-aatttagtaaaagtgttatgtctaatgatt---tcattcaattccttaatctgtgt 56556236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 29840197 - 29840250
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||| |||||| |||||||||||| ||| |||||| |||||    
T  29840197 tttagtaaaagtgttatgtctaatgattatttcattccattccttaatttgtgt 29840250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 16412253 - 16412293
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgat 243  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  16412253 ataagaaaaaattgactttttagattcattgaataattgat 16412293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 38761871 - 38761788
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatc 128  Q
    ||||||| ||||||| ||| ||||||||| | |  |||||||||||||||||| |||| | ||||||| |||| |||||||||||    
T  38761871 tttaagtgtgtctttctctaataaagtaagg-gtgatttagtaaaagtgttatgtctattaattatttaattctatttcttaatc 38761788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 50072374 - 50072467
Alignment:
Q  60 tcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttctt---aatctgtgtaccaacgcctaaaacgac 151  Q
    ||||||||||||| | ||| ||||||||||  |||||||| ||| |||||||||||| |||||||   |||||||||||||| | ||||| ||||    
T  50072374 tcttataaagtaagg-gcagtttagtaaaaacgttatatccaatgattatttcattccatttcttataaatctgtgtaccaaagtctaaagcgac 50072467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 10306491 - 10306456
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatg 244  Q
    |||||||||||||||||||| |||||||||||||||    
T  10306491 aaaaattgactttttagattgattaaataattgatg 10306456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 20459369 - 20459310
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| |||| || |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  20459369 ataagaaaaagttaactttttagattcattcaataattgatgtacctagcctagaaatag 20459310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 29289936 - 29289852
Alignment:
Q  44 tttaagtttgtctttttctt---ataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaa 126  Q
    ||||||||||||||||| ||   ||||||||||| || ||||| ||||| | |||| |||||| |||||||||||| |||||||||    
T  29289936 tttaagtttgtctttttttttttataaagtaaag-gcgatttattaaaaatattatgtctaatgattatttcattccatttcttaa 29289852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 35928596 - 35928650
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatc 99  Q
    ||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||||    
T  35928596 tttaagtttatctttttcttataaagtcatg-gcaatttagtaaaagtgatatatc 35928650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 47866055 - 47866114
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| |||| || |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  47866055 ataagaaaaagttaactttttagattcattcaataattgatgtacctagcctagaaatag 47866114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 30492865 - 30492915
Alignment:
Q  83 agtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||||| |||||| |||||||||||| ||| |||||| |||||    
T  30492865 agtaaaagtgttatgtctaatgattatttcattccattccttaatttgtgt 30492915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 45903426 - 45903377
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    |||| |||||| |||||||| ||| |||||||||||| ||||||||||||    
T  45903426 tttaataaaagcgttatatccaatgattatttcattctatttcttaatct 45903377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 53225773 - 53225736
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataatt 240  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  53225773 ataagaaaaaattgactttttagattcattgaataatt 53225736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 13051841 - 13051801
Alignment:
Q  210 aaaattgactttttagattcattaaataattgatgaatcta 250  Q
    |||||| |||||||| ||||||||||||| |||||||||||    
T  13051841 aaaatttactttttaaattcattaaataaatgatgaatcta 13051801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 17499760 - 17499732
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  17499760 tttaagtttgtctttttcttataaagtaa 17499732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 23226969 - 23227021
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtcta 255  Q
    ||||| |||||||||||||||||||||||||  ||||| ||| |||| |||||    
T  23226969 ataagaaaaaattgactttttagattcattatgtaattaatgtatcttgtcta 23227021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 54233925 - 54233953
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  54233925 tttaagtttgtctttttcttataaagtaa 54233953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 34002175 - 34002086
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| ||| |||||||||| ||| |||||||||||  ||||||||||||||||    
T  34002175 tttaattttgtctttttcttataaagtaaagtgcagtttagcaaaggtgttatatccaatgattatttcatttcatttcttaatctgtgt 34002086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 18886756 - 18886851
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacg 140  Q
    ||||| |||||||||| |||||||||||| | ||| ||||||||||| |||||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  18886756 tttaattttgtcttttccttataaagtaagg-gcagtttagtaaaagcgttatatctaatgattatttcattccatttcttagtctgtgtgccaacg 18886851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 3680965 - 3680877
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||| ||||||||||||||||||||||| | ||| |||||||||||| |||| |||||| |||||||||||| |||| |||||||||||    
T  3680965 tttaaatttgtctttttcttataaagtaa-gagcagtttagtaaaagttttatgtctaatgattatttcattccattttttaatctgtgt 3680877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 17869348 - 17869436
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||| |||||||||||||||||||  ||||||| |||||||||||| |||||| |||||||||||  ||| ||||||||||||    
T  17869348 tttaagtttgtatttttcttataaagtaaaga-caatttaataaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 17869436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 36447653 - 36447550
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||| |||||||||||||||||||||  || |||| |||||| |||||||| | | |||||||||||| |||||||||||||| |||||| ||||    
T  36447653 tttaattttatctttttcttataaagtaaaga-cagtttaataaaagagttatatccagtaattatttcattccatttcttaatctgtataccaaagcct 36447555  T
Q  144 aaaac 148  Q
    |||||    
T  36447554 aaaac 36447550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 41905977 - 41905874
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||||| |||||||| ||| ||||||||| |  ||||||||||||||||  ||| ||||    
T  41905977 tttaattttgtctttttcttataaagtaagg-gcagtttagtaaaagcgttatatccaatgattatttcagttcatttcttaatctgtgtgtcaaagcct 41905879  T
Q  144 aaaac 148  Q
    |||||    
T  41905878 aaaac 41905874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 34733420 - 34733500
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttctta 125  Q
    ||||||||||||||||||||||||||||| | | | ||||||||||||||||| |||||| |||||||||||  ||||||||    
T  34733420 tttaagtttgtctttttcttataaagtaagg-gtagtttagtaaaagtgttatgtctaatgattatttcatttcatttctta 34733500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 28044183 - 28044101
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaat 127  Q
    ||||| ||||||||||||||||||||| ||| ||| ||||||||||  |||||||| ||| |||||||||||  ||||||||||    
T  28044183 tttaattttgtctttttcttataaagt-aagggcagtttagtaaaaacgttatatccaatgattatttcattttatttcttaat 28044101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 42259591 - 42259521
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcatt 115  Q
    |||||| |||||||||||||||||||| ||| ||| ||||||||||||||||| |||||| ||||| |||||    
T  42259591 tttaagcttgtctttttcttataaagt-aagggcattttagtaaaagtgttatgtctaataattatctcatt 42259521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 26527428 - 26527356
Alignment:
Q  56 tttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||||||||||||||||  ||| ||||||||| ||||||| |||||| |||||| ||||| ||||||||||||    
T  26527428 tttttcttataaagtaaaa-gcagtttagtaaaggtgttatgtctaatgattattgcattccatttcttaatct 26527356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 30833105 - 30833066
Alignment:
Q  77 caatttagtaaaagtgttatatctaattattatttcattc 116  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30833105 caatttagtaaaagtgttatatctaataattatttcattc 30833066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 36245505 - 36245450
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||| |||||||||||||||||||||||| | ||||||||| |||| ||||||||    
T  36245505 ataagaaaaaattgactttttagattcattgagtaattgatgtatcttgtctagaa 36245450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 16861540 - 16861590
Alignment:
Q  212 aattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||||||||||||||||||| ||||||||||| || ||||||| ||||||    
T  16861540 aattgactttttagattcattgaataattgatgtatatagtctaaaaatag 16861590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 33056327 - 33056242
Alignment:
Q  44 tttaagtttgtctttttctta-taaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||| ||||||||||||||| |||||||| | ||| ||||||||||||||||| | |||| |||||||||||  ||| ||||||||    
T  33056327 tttaaatttgtctttttcttaataaagtaagg-gcagtttagtaaaagtgttatgtttaatgattatttcatttcattccttaatct 33056242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 40207432 - 40207379
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatat 98  Q
    |||||||||||| |||||||||||||| ||| ||| |||||||||||||||||||    
T  40207432 tttaagtttgtcattttcttataaagt-aagggcagtttagtaaaagtgttatat 40207379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 32275306 - 32275394
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||  ||||||||||||||||||| ||| ||||||||||  || || | |||| |||||||||||  |||||||||| |||||    
T  32275306 tttaagtttgattttttcttataaagtaaag-gcagtttagtaaaaacgtcatgtttaatgattatttcatttcatttcttaatatgtgt 32275394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 32873203 - 32873127
Alignment:
Q  50 tttgtctttttctta-taaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaa 126  Q
    ||||||||| ||||| |||| ||||| | |||||| ||||| ||||||||||||| |||||| |||||||||||||||    
T  32873203 tttgtctttctcttactaaaataaag-gtaatttaataaaaatgttatatctaatgattattgcattcaatttcttaa 32873127  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 22627396 - 22627313
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatc 128  Q
    |||||||||||||| || ||||||||||||| ||| ||||||||| ||||||| | |||  |||||||||||  ||| |||||||    
T  22627396 tttaagtttgtcttatttttataaagtaaag-gcagtttagtaaatgtgttatgtttaacgattatttcatttcattccttaatc 22627313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 27231962 - 27231903
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||| |||| || |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  27231962 ataagaaaaagttaactttttagattcattcaataattgatgtacctagcctagaaatag 27231903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 28677446 - 28677391
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||| |||||||||||||||||||| ||| | ||||||||| |||| ||||||||    
T  28677446 ataagaaaaaattgactttttagatttattgagtaattgatgtatcttgtctagaa 28677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 45533249 - 45533304
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||| |||||||||||||||||||||||||  ||||| ||| |||| ||||||||    
T  45533249 ataagaaaaaattgactttttagattcattatgtaattaatgtatcttgtctagaa 45533304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 4925910 - 4925951
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatg 244  Q
    ||||| |||| ||||||||||||||||||||| |||||||||    
T  4925910 ataagaaaaatttgactttttagattcattaagtaattgatg 4925951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 28020123 - 28020070
Alignment:
Q  209 aaaaattgactttttagattcattaaataattgatgaatctagtctagaaatag 262  Q
    ||||||||| ||||||||||||||||||||||| || ||||   ||||||||||    
T  28020123 aaaaattgattttttagattcattaaataattgttgtatctgacctagaaatag 28020070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 40298984 - 40299037
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||| || |||||||||||||||  ||| |||||| |||||    
T  40298984 tttagtaaaagtgttatgtccaattattatttcatttcattccttaatttgtgt 40299037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 42010617 - 42010553
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattat 109  Q
    ||||||||||||||||||||||||| | ||| ||| |||||||||| | |||| |||||| |||||    
T  42010617 tttaagtttgtctttttcttataaaat-aagggcagtttagtaaaaatattatgtctaatgattat 42010553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 42121653 - 42121741
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||| | ||||||||| ||||||||| |  || ||||||||||||| ||| |||||| ||||||| |||  ||| ||||||||||||    
T  42121653 tttaagtgtatctttttctaataaagtaaggt-cagtttagtaaaagtgatatgtctaatgattatttgatttcattccttaatctgtgt 42121741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 6521930 - 6521958
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  6521930 tttaagtttgtctttttcttataaagtaa 6521958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 10684871 - 10684843
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  10684871 tttaagtttgtctttttcttataaagtaa 10684843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 19512750 - 19512802
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtcta 255  Q
    ||||| || ||||||||||||| ||||||| ||||||||| | ||||||||||    
T  19512750 ataagaaacaattgactttttaaattcattgaataattgacgtatctagtcta 19512802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 26963592 - 26963620
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaa 72  Q
    |||||||||||||||||||||||||||||    
T  26963592 tttaagtttgtctttttcttataaagtaa 26963620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 30869304 - 30869260
Alignment:
Q  214 ttgactttttagattcattaaataattgatgaatctagtctagaa 258  Q
    ||||||||||||||||||| | ||||||||| |||| ||||||||    
T  30869304 ttgactttttagattcattgagtaattgatgtatcttgtctagaa 30869260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 35443624 - 35443664
Alignment:
Q  214 ttgactttttagattcattaaataattgatgaatctagtct 254  Q
    ||||||||||||||| |||| |||||||||| |||||||||    
T  35443624 ttgactttttagatttattagataattgatgtatctagtct 35443664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 37491288 - 37491340
Alignment:
Q  203 ataaggaaaaattgactttttagattcattaaataattgatgaatctagtcta 255  Q
    ||||| ||||||| |||||||||||| ||||||||| ||||| || |||||||    
T  37491288 ataagcaaaaatttactttttagatttattaaataaatgatgtatgtagtcta 37491340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 43174318 - 43174358
Alignment:
Q  217 actttttagattcattaaataattgatgaatctagtctaga 257  Q
    |||||||||||| ||||||||||||||| |||| |||||||    
T  43174318 actttttagattaattaaataattgatgtatcttgtctaga 43174358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 12123 - 12040
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatct 129  Q
    ||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||||| |||||||||||| ||| ||||||||    
T  12123 tttaagtttgtctttttcttataaagtaaggc--agtttagtaaaagtgttatgtctaatgattatttcattccattccttaatct 12040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 1653 - 1759
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcct 143  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||  |||||||| ||| |||||||||||  |||||||||||| ||| | || ||||    
T  1653 tttaattttgtctttttcttataaagtaagg-gcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatctttgtgctaaagcct 1751  T
Q  144 aaaacgac 151  Q
    ||| ||||    
T  1752 aaagcgac 1759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 1690 - 1790
Alignment:
Q  50 tttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcctaaaacg 149  Q
    ||||||||||||||||||||||| |  || |||||||||| ||||||||| ||| |||||||||||  |||||||||||| ||| |||||| ||||| ||    
T  1690 tttgtctttttcttataaagtaaggt-cagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtgccaacgtctaaagcg 1788  T
Q  150 ac 151  Q
    ||    
T  1789 ac 1790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 9429 - 9529
Alignment:
Q  50 tttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcctaaaacg 149  Q
    ||||||||||||||||||||||| |  || |||||||||| ||||||||| ||| |||||||||||  |||||||||||| ||| |||||| ||||| ||    
T  9429 tttgtctttttcttataaagtaaggt-cagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtgccaacgtctaaagcg 9527  T
Q  150 ac 151  Q
    ||    
T  9528 ac 9529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 16081 - 15994
Alignment:
Q  44 tttaagtttgtctttttcttataaagtaaagcgcaatttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    |||||||||||| |||| ||||||||||||| | | |||||||||| |||||||| |||| ||||||||||| ||||| ||||| |||||    
T  16081 tttaagtttgtcatttt-ttataaagtaaag-gtagtttagtaaaaatgttatatataatgattatttcatttaattttttaatatgtgt 15994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 13075 - 13022
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgt 133  Q
    ||||||||||||||||| |||||| |||||||||||  ||| ||||||||||||    
T  13075 tttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 13022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 8294 - 8365
Alignment:
Q  80 tttagtaaaagtgttatatctaattattatttcattcaatttcttaatctgtgtaccaacgcctaaaacgac 151  Q
    |||||||||||  ||||||| ||| |||||||||||| |||| ||||||||||| ||||  |||||| ||||    
T  8294 tttagtaaaagccttatatccaatgattatttcattccattttttaatctgtgtgccaaaacctaaagcgac 8365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 18484 - 18452
Alignment:
Q  218 ctttttagattcattaaataattgatgaatcta 250  Q
    ||||||||||||||||||||||| |||||||||    
T  18484 ctttttagattcattaaataattaatgaatcta 18452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 423368 - 423336
Alignment:
Q  212 aattgactttttagattcattaaataattgatg 244  Q
    ||||||||||||||||||||| |||||||||||    
T  423368 aattgactttttagattcattgaataattgatg 423336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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