View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1873_high_4 (Length: 396)

Name: NF1873_high_4
Description: NF1873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1873_high_4
NF1873_high_4
[»] scaffold0110 (4 HSPs)
scaffold0110 (18-203)||(27467-27650)
scaffold0110 (234-384)||(27651-27801)
scaffold0110 (18-118)||(12031-12135)
scaffold0110 (18-118)||(19768-19872)
[»] chr1 (1 HSPs)
chr1 (212-260)||(7267900-7267948)
[»] chr5 (3 HSPs)
chr5 (203-257)||(13538265-13538319)
chr5 (212-257)||(13542882-13542927)
chr5 (278-332)||(24406634-24406690)
[»] chr4 (2 HSPs)
chr4 (212-326)||(24870601-24870718)
chr4 (211-251)||(13632093-13632133)
[»] chr8 (1 HSPs)
chr8 (212-257)||(11021341-11021386)
[»] chr7 (3 HSPs)
chr7 (211-256)||(41780267-41780311)
chr7 (211-251)||(33228703-33228743)
chr7 (212-256)||(46734196-46734240)
[»] chr3 (3 HSPs)
chr3 (211-256)||(11029667-11029712)
chr3 (230-259)||(32181241-32181270)
chr3 (212-257)||(54923490-54923535)
[»] chr2 (1 HSPs)
chr2 (231-302)||(32517851-32517923)


Alignment Details
Target: scaffold0110 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 27467 - 27650
Alignment:
Q  18 ggtatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacccggtttgtgtttcttacctaatctcaattaattattcttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27467 ggtatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacccggtttgtgtttcttacctaatctcaattaattattcttaa 27566  T
Q  118 tcagccaaaaattaatagtgtttttgttgataaagaaagaacatactagaaagtgtgtttttgttggaagtaagaaaatcttgttt 203  Q
    ||||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27567 tcagccaaaaatta--agtgtttttgttgataaataaagaacattctagaaagtgtgtttttgttggaagtaagaaaatcttgttt 27650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 234 - 384
Target Start/End: Original strand, 27651 - 27801
Alignment:
Q  234 aatgtcgaaattgttaggttggacatcgtgttcgacgttcgaaactggtacctccactttgtgcgtgtgtttacgagggctttgccatctcgtcaatctn 333  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27651 aatgtcgaaattgttaggttggacatcgtgaccgaggttcgaaactggtacctccactttgtgcgtgtgtttacgagggctttgccatctcgtcaatcta 27750  T
Q  334 nnnnnnntcttgttttgatgaaattattttaggaaaatgcatgttgtgtct 384  Q
           ||||||||||||||||||||||||||||||||||||||||||||    
T  27751 aaaaaaatcttgttttgatgaaattattttaggaaaatgcatgttgtgtct 27801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 12031 - 12135
Alignment:
Q  18 ggtatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacccggtttgtgtttcttac----ctaatctcaattaattattc 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    ||||||||||||||||||||    
T  12031 ggtatagctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacctggtctgtgtttcttacctagctaatctcaattaattattc 12130  T
Q  114 ttaat 118  Q
    |||||    
T  12131 ttaat 12135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 19768 - 19872
Alignment:
Q  18 ggtatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacccggtttgtgtttcttac----ctaatctcaattaattattc 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    ||||||||||||||||||||    
T  19768 ggtatagctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacctggtctgtgtttcttacctagctaatctcaattaattattc 19867  T
Q  114 ttaat 118  Q
    |||||    
T  19868 ttaat 19872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 7267948 - 7267900
Alignment:
Q  212 aagtcctaacttaacttgcaaaaatgtcgaaattgttaggttggacatc 260  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  7267948 aagtcctaactcaacttacaaaaatgtcgaaattgttagtttggacatc 7267900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 13538319 - 13538265
Alignment:
Q  203 ttgtcccggaagtcctaacttaacttgcaaaaatgtcgaaattgttaggttggac 257  Q
    |||||||  ||||||||||| ||||| ||||||| |||||||||||||| |||||    
T  13538319 ttgtcccataagtcctaactcaacttacaaaaatatcgaaattgttaggctggac 13538265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 13542927 - 13542882
Alignment:
Q  212 aagtcctaacttaacttgcaaaaatgtcgaaattgttaggttggac 257  Q
    ||||||||||| |||||  ||||||||| |||||||||||||||||    
T  13542927 aagtcctaactcaacttaaaaaaatgtcaaaattgttaggttggac 13542882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 24406634 - 24406690
Alignment:
Q  278 ctggtacctccactttgtgcgtg--tgtttacgagggctttgccatctcgtcaatct 332  Q
    ||||||||||||||||||| |||  |||||| || ||||||||||||||||| ||||    
T  24406634 ctggtacctccactttgtgtgtgtatgtttatgatggctttgccatctcgtctatct 24406690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 24870601 - 24870718
Alignment:
Q  212 aagtcctaacttaacttgcaaaaatgtcgaaattgttaggttggacatcgtgttcgacgttcgaaact-ggtacctccacttt--gtgcgtgtgtttacg 308  Q
    |||||||| || |||| ||||||||| |||||||||||||  |||| |  ||  ||| ||||||| || ||||||||||||||  ||| ||| ||||| |    
T  24870601 aagtcctagctcaactggcaaaaatgccgaaattgttaggccggacgtaatgaccgaggttcgaacctcggtacctccactttacgtgtgtgagtttatg 24870700  T
Q  309 agggctttgccatctcgt 326  Q
    | ||||||||||||||||    
T  24870701 atggctttgccatctcgt 24870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 13632093 - 13632133
Alignment:
Q  211 gaagtcctaacttaacttgcaaaaatgtcgaaattgttagg 251  Q
    ||||||||| || |||| |||||||||||||||||||||||    
T  13632093 gaagtcctagctcaactggcaaaaatgtcgaaattgttagg 13632133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 11021341 - 11021386
Alignment:
Q  212 aagtcctaacttaacttgcaaaaatgtcgaaattgttaggttggac 257  Q
    ||||||||||| |||| ||||||||||||||||| |||||| ||||    
T  11021341 aagtcctaactcaactagcaaaaatgtcgaaattattaggtcggac 11021386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 41780267 - 41780311
Alignment:
Q  211 gaagtcctaacttaacttgcaaaaatgtcgaaattgttaggttgga 256  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||    
T  41780267 gaagtcctaactcaactagcaaaa-tgtcgaaattgttaggttgga 41780311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 33228703 - 33228743
Alignment:
Q  211 gaagtcctaacttaacttgcaaaaatgtcgaaattgttagg 251  Q
    ||||||||| || |||| |||||||||||||||||||||||    
T  33228703 gaagtcctagctcaactggcaaaaatgtcgaaattgttagg 33228743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 46734240 - 46734196
Alignment:
Q  212 aagtcctaacttaacttgcaaaaatgtcgaaattgttaggttgga 256  Q
    ||||||||||| || | ||||||||||||||||||||||| ||||    
T  46734240 aagtcctaactcaattggcaaaaatgtcgaaattgttaggctgga 46734196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 11029667 - 11029712
Alignment:
Q  211 gaagtcctaacttaacttgcaaaaatgtcgaaattgttaggttgga 256  Q
    ||||||||| || |||| ||||||||||||||||||||||| ||||    
T  11029667 gaagtcctagctcaactggcaaaaatgtcgaaattgttaggctgga 11029712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 32181241 - 32181270
Alignment:
Q  230 caaaaatgtcgaaattgttaggttggacat 259  Q
    ||||||||||||||||||||||||||||||    
T  32181241 caaaaatgtcgaaattgttaggttggacat 32181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 54923490 - 54923535
Alignment:
Q  212 aagtcctaacttaacttgcaaaaatgtcgaaattgttaggttggac 257  Q
    ||||||||||| |||| | |||||||||||||||||||||| ||||    
T  54923490 aagtcctaactcaactggtaaaaatgtcgaaattgttaggtcggac 54923535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 32517923 - 32517851
Alignment:
Q  231 aaaaatgtcgaaattgttaggttggacatcgtgttcgacgttcgaa-actggtacctccactttgtgcgtgtg 302  Q
    ||||||||||||||||||||| ||||| || ||  ||| |||||||  | ||||||||||||||||| |||||    
T  32517923 aaaaatgtcgaaattgttaggctggacgtcatgaccgaggttcgaaccccggtacctccactttgtgtgtgtg 32517851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University