View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1873_high_6 (Length: 295)
Name: NF1873_high_6
Description: NF1873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1873_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 33320291 - 33320027
Alignment:
| Q |
18 |
ggtctcatagtacatatgtgatgtgattacattcggttactttattttctcagattattattgttgttgacgtgtcggtgcttcatgggtctagagtgca |
117 |
Q |
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| T |
33320291 |
ggtctcatagtacatatgtgatgtgattacattcagttactttattttctcagattattattgttgttgacgtgtcg-tgcttcataggt-tagagtgca |
33320194 |
T |
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| Q |
118 |
aacataatgagttgattatcataactgggactagcctatattagcagaaggtgcaaaataacatttattcatgtttccaacatgccttgaaataagatgt |
217 |
Q |
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| T |
33320193 |
aacataatgagttgattatcataactgggactagcctatattagcagaaggtgcaaaataacatttattcatgtttccaacatgccttgaaataagatgt |
33320094 |
T |
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| Q |
218 |
atctcacaatcttactcatgagtaacctataattcaatcaagtaatttgatggtaaaagtatttcat |
284 |
Q |
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| T |
33320093 |
atctcacaatcttactcatgagtaacctataattcaatcaagtaatttgatggtaaaaatatttcat |
33320027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 1970216 - 1970152
Alignment:
| Q |
39 |
tgtgattacattcggttactttattttctcagattattattgttgttgacgtgtcggtgcttcat |
103 |
Q |
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| T |
1970216 |
tgtgattacactcgattaatttattctcgcagattattattagtgttggcgtgtcagtgcttcat |
1970152 |
T |
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