View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1873_low_5 (Length: 381)
Name: NF1873_low_5
Description: NF1873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1873_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 44940462 - 44940109
Alignment:
| Q |
18 |
ggaataacggacaaacaatgaggtaaaaatttcccgataaatatatcaattggcacacttttagtggcaatactcataaaagaacaagcaatttttcagg |
117 |
Q |
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| T |
44940462 |
ggaataacggacaaacaatgaggtaaaaatttcccgagaaatatatcaattggtacacttttagtggcaatactcataaaagaacaagcaatttttcagg |
44940363 |
T |
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| Q |
118 |
tgactaagaatgtgagagcacagacatattgtataccacaggggagcatcagggaaatcaataaagtttaaatacatgaagaaaatgacatggtataaaa |
217 |
Q |
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| T |
44940362 |
tgactaagaatgtgagagca--gacatattgtataccacaggggagcatcagggaaatcaataaagtttaaatacatgaagaaaatgacctggtataaaa |
44940265 |
T |
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| Q |
218 |
ttatatacaaataactggaaacagactttgcaccgtttggtaacacttcatggacttcttaggttatgtatgcagttccaaaaattgttattagcatatg |
317 |
Q |
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| T |
44940264 |
ttatatacaaataactggaaacagactttgcaccgtttggtaacacttcatggacttcttaggttatgtatgcagttccaaaaattgttattagcatatg |
44940165 |
T |
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| Q |
318 |
gaacctaacgcatatacctctttggacaaagtctgaatctctgctgaagaattatc |
373 |
Q |
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| T |
44940164 |
gaacctaacgcatatacctctttggacaaagtctgaatctctgctgaagaattatc |
44940109 |
T |
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