View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18740_high_11 (Length: 256)
Name: NF18740_high_11
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 32598146 - 32598273
Alignment:
| Q |
117 |
gctaccatcttttttatc----tatcatttttgtgttataaatctataaaaattttaattctaaagctatatgtatattctgttcaattgcaaccatact |
212 |
Q |
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| T |
32598146 |
gctaccatcttttttatctatctatcatttttgtcttacaaatctataaatattttaattctaaagctatatgtatattttgttcaattgcaaccatact |
32598245 |
T |
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| Q |
213 |
aatgacaagaacatatgtccaaaattat |
240 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
32598246 |
aatgataagaacatatgtccaaaattat |
32598273 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 32598091 - 32598144
Alignment:
| Q |
13 |
aatattctcaagtatatagttagaaggacgatagtactatgccgccaccacatc |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32598091 |
aatattctcaagtatatagttagaaggacgatagtactatgccgccaccacatc |
32598144 |
T |
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