View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18740_high_13 (Length: 241)
Name: NF18740_high_13
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_high_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 39273219 - 39272987
Alignment:
| Q |
9 |
acatcatcacccattcaagaactccctcaccttgctcagagatgcaatgctatcaacctagctgaaggcttccctgacttccctgctcctctccacatca |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39273219 |
acatcatcacccattcaagaactctctcaccttgctcagagatgcaatgctatcaacctagctgaaggcttccctgacttccctgctcctctccacatca |
39273120 |
T |
|
| Q |
109 |
aaaacgccgccgtttccgccatcaattccgacctcaaccaatacaggtttttctttttcttcacacacaactcaaactaataatacatttttcaccaact |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39273119 |
aaaacgccgccgtttccgccattaattccgacctcaaccaatacaggtttttctttttctttacacacaactcaaactaataatacatttttcaccaatt |
39273020 |
T |
|
| Q |
209 |
catagaatctatctactctttgtatttcaaggc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39273019 |
catagaatctatctactctttgtatttcaaggc |
39272987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University