View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18740_high_2 (Length: 760)

Name: NF18740_high_2
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18740_high_2
NF18740_high_2
[»] scaffold0088 (4 HSPs)
scaffold0088 (1-304)||(46914-47219)
scaffold0088 (293-515)||(46668-46890)
scaffold0088 (623-679)||(46420-46476)
scaffold0088 (584-621)||(46551-46588)
[»] chr4 (4 HSPs)
chr4 (162-243)||(11314441-11314522)
chr4 (164-244)||(27918506-27918586)
chr4 (163-231)||(42380866-42380934)
chr4 (164-228)||(42170570-42170634)
[»] chr5 (4 HSPs)
chr5 (163-243)||(40279675-40279755)
chr5 (163-248)||(41954677-41954761)
chr5 (158-243)||(15711128-15711211)
chr5 (169-248)||(14045171-14045250)
[»] chr2 (5 HSPs)
chr2 (163-243)||(11129529-11129609)
chr2 (170-231)||(21425054-21425115)
chr2 (163-244)||(28694479-28694560)
chr2 (166-243)||(43264087-43264162)
chr2 (163-245)||(42063971-42064053)
[»] chr3 (4 HSPs)
chr3 (163-248)||(1214866-1214950)
chr3 (163-204)||(43978456-43978497)
chr3 (186-248)||(27039061-27039123)
chr3 (195-248)||(41935957-41936010)
[»] chr8 (5 HSPs)
chr8 (160-248)||(33822156-33822244)
chr8 (163-244)||(23052134-23052215)
chr8 (166-244)||(5374500-5374578)
chr8 (163-248)||(33747600-33747687)
chr8 (169-219)||(37288497-37288547)
[»] chr7 (3 HSPs)
chr7 (163-245)||(40343294-40343376)
chr7 (164-246)||(37467224-37467303)
chr7 (196-229)||(22597117-22597150)
[»] chr1 (4 HSPs)
chr1 (163-237)||(9001595-9001669)
chr1 (163-243)||(21937922-21938002)
chr1 (166-226)||(6947947-6948007)
chr1 (195-248)||(4226288-4226341)
[»] chr6 (1 HSPs)
chr6 (152-201)||(8543497-8543546)


Alignment Details
Target: scaffold0088 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 47219 - 46914
Alignment:
Q  1 ctgaataaaaacaacaaaactacaatgatcatttataaagaggccaaagacattaattctctctttttactcatatcaagttgattacatccctagatat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47219 ctgaataaaaacaacaaaactacaatgatcatttatatagaggccaaagacattaattctctctttttactcatatcaagttgattacatccgtagatat 47120  T
Q  101 tcacagaaatgaaata-ggtaaaagaagaaccaacaattaaattatattctatctgtcccactttatatgtcattctagcaaaatttatttatttcaaat 199  Q
    | |||||||||||| | |||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  47119 tgacagaaatgaaaaaaggtaaaagaaaaaccaacaattaaattatattccatctgttccactttatatgtcattctagcaaaatttatttgtttcaaat 47020  T
Q  200 tatatgtcactttacaatatgaaagaatcattcatgtttattttcctatgtatgtgtgtttaaatgttttttattgtggctttgcccataaaa-tatgtc 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  47019 tatatgtcactttacaatatcaaagaatcattcatgtttattttcctatgtatgtgtgtttaaatgttttttattgtggctttgtccgtaaaagtatgtc 46920  T
Q  299 tcttat 304  Q
    ||||||    
T  46919 tcttat 46914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 293 - 515
Target Start/End: Complemental strand, 46890 - 46668
Alignment:
Q  293 tatgtctcttatatcaaaaaccaacaaatttattttcttgagagagcgtataaatgtcatgtttaaagttaatgcaaatcaccaataacataaagtgttt 392  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  46890 tatgtctcttatatcaaaaaccaacaaatttatttttttgagagagcctataaatttcatgtttaaaattaatgcaaatcaccaataacgtaaagtgttt 46791  T
Q  393 ataatgagtaaatatcatatccatttattaagaatgttctactataacattttggcaataacacattcagaaatataataacagtgttgcatgggtnnnn 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  46790 ataatgagtaaatatcatatccatttattaagaatgttctactataacattttggcaataacacattcagaaatataataacagtgttgcatggataaaa 46691  T
Q  493 nnnttagatatcaatcactttac 515  Q
       ||||||||||||||||||||    
T  46690 aaattagatatcaatcactttac 46668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 623 - 679
Target Start/End: Complemental strand, 46476 - 46420
Alignment:
Q  623 attttctggatcaaaataacaacaaattgtcaaaacaattaatcacaaaaccccaga 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46476 attttctggatcaaaataacaacaaattgtcaaaacaattaatcacaaaatcccaga 46420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 621
Target Start/End: Complemental strand, 46588 - 46551
Alignment:
Q  584 tgtatatcgtactaagccatcaataacacgattctgcc 621  Q
    |||||||||||||| |||||||||||||||||||||||    
T  46588 tgtatatcgtactacgccatcaataacacgattctgcc 46551  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 11314522 - 11314441
Alignment:
Q  162 tttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttatttt 243  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||| ||||||||||| |||||||||||    
T  11314522 tttatatgtcattctaccaaaatttatttgtttcaaattatatatcattttacaatatcaaagaatcattaatgtttatttt 11314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 27918586 - 27918506
Alignment:
Q  164 tatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttc 244  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| || |||||||| ||| ||||||||    
T  27918586 tatatgtcattctagcaaaatttgtttctttcaaattatatgtcattttacaatatcaatgaatcattaatgcttattttc 27918506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 42380934 - 42380866
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    |||||||| |||||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||||||    
T  42380934 ttatatgtaattctaacaaaatttgtttgtttcaaattctatgtcactttacaatatcaaagaatcatt 42380866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 42170570 - 42170634
Alignment:
Q  164 tatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatc 228  Q
    ||||||||||||||||||||| ||||| || ||| |||||||||| |||||||||| ||||||||    
T  42170570 tatatgtcattctagcaaaatctatttgttccaagttatatgtcattttacaatatcaaagaatc 42170634  T

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Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 40279755 - 40279675
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttatttt 243  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||| ||||    
T  40279755 ttatatgtcattctaacaaaatttgtttatttcaaattatatatcactttacaatattaatgaatcattaatgtttttttt 40279675  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 41954761 - 41954677
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    ||||||||||||||| ||||||| |||| |  ||||||||||||||||||||||||  || |||||||| | ||||||||||||||    
T  41954761 ttatatgtcattctaccaaaattcatttgtc-caaattatatgtcactttacaataacaaggaatcattgacgtttattttcctat 41954677  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 15711211 - 15711128
Alignment:
Q  158 ccactttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttatttt 243  Q
    |||||||||| |||||| || |||||||| ||| |  ||||||||||||||||||||||||| ||||||| ||| || ||||||||    
T  15711211 ccactttataagtcattttaacaaaatttgtttgt--caaattatatgtcactttacaatatcaaagaattattaatatttatttt 15711128  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 14045250 - 14045171
Alignment:
Q  169 gtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    |||||||||  ||||||||||| | ||||||||||||||| |||||||||| ||  ||| ||| ||| ||||||| ||||    
T  14045250 gtcattctaataaaatttatttgtctcaaattatatgtcattttacaatatcaataaataattaatgcttatttttctat 14045171  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 11129529 - 11129609
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttatttt 243  Q
    ||||||||||||||| |||||||| ||| ||  |||||||||||||||||||||||| || |||||||| |||||||||||    
T  11129529 ttatatgtcattctaacaaaatttgtttgttctaaattatatgtcactttacaatatcaaggaatcattaatgtttatttt 11129609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 21425054 - 21425115
Alignment:
Q  170 tcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||||| ||| || ||||||||| ||||||||||||| | |||||||||||    
T  21425054 tcattctagcaaaatttgtttgttccaaattatacgtcactttacaatgtcaaagaatcatt 21425115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 28694560 - 28694479
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttc 244  Q
    |||||||| ||| ||||||||||||||| || ||||||| |||||| |||||||||| ||||||| ||| ||| ||| ||||    
T  28694560 ttatatgttattttagcaaaatttatttgttccaaattacatgtcattttacaatattaaagaattattaatgcttaatttc 28694479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 43264162 - 43264087
Alignment:
Q  166 tatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttatttt 243  Q
    ||||||||||||||||||||| ||| |  ||||  |||||||| |||||||||| ||||||||||| ||| |||||||    
T  43264162 tatgtcattctagcaaaatttgtttttcccaaa--atatgtcattttacaatatcaaagaatcattaatgcttatttt 43264087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 42063971 - 42064053
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcc 245  Q
    ||||| ||||||||| |||||||| ||||| | |||||||| |||| |||| ||||  || |||||||  |||||||||||||    
T  42063971 ttatacgtcattctatcaaaatttgtttatcttaaattataagtcattttataataccaatgaatcatcaatgtttattttcc 42064053  T

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Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 1214950 - 1214866
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||  || |||||||| | ||||||||||||||    
T  1214950 ttatatgtcattctaccaaaattcatttgtt-caaattatatgtcactttacaataacaaggaatcattgacgtttattttcctat 1214866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 43978497 - 43978456
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatat 204  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  43978497 ttatatgtcattttagcaaaatttatttattccaaattatat 43978456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 27039123 - 27039061
Alignment:
Q  186 tatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    ||||||||||||||| |||||||||||||||||  || ||| |||| |||||  |||||||||    
T  27039123 tatttatttcaaattgtatgtcactttacaataccaatgaaacattaatgttacttttcctat 27039061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 41935957 - 41936010
Alignment:
Q  195 caaattatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    ||||||||||||| ||||||||||  || |||||||| ||||| ||||||||||    
T  41935957 caaattatatgtcgctttacaataccaatgaatcattaatgttaattttcctat 41936010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 33822156 - 33822244
Alignment:
Q  160 actttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |  || ||||||||| || |||||||| |||  |||||||||||    
T  33822156 actttatatgtcattctagcaaaatttatttgttccaaattatacgcgaccttacaatatcaaggaatcattaatgcgtattttcctat 33822244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 23052134 - 23052215
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttc 244  Q
    |||||| |||| | |||||||||| ||| ||| |||||||||||||||||||||||| || |||||||| |||||| |||||    
T  23052134 ttatatatcatccgagcaaaatttgtttgttttaaattatatgtcactttacaatattaaggaatcattaatgttttttttc 23052215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 5374500 - 5374578
Alignment:
Q  166 tatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttc 244  Q
    ||||||||| ||| ||||||| ||| || |||||||||||||| |||||||||| |  |||||||| ||||||||||||    
T  5374500 tatgtcattttagtaaaatttgtttgttccaaattatatgtcattttacaatatcattgaatcattaatgtttattttc 5374578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 33747600 - 33747687
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaat--tatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    |||||| ||||||||||||||||| ||| | ||||||  ||||||||||||| || |||||| |||| ||  |||||| |||||||||    
T  33747600 ttatatatcattctagcaaaatttgtttgtctcaaattatatatgtcacttttcactatgaatgaatgatcaatgtttgttttcctat 33747687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 37288547 - 37288497
Alignment:
Q  169 gtcattctagcaaaatttatttatttcaaattatatgtcactttacaatat 219  Q
    |||||| || |||| ||||||| ||| ||||||||||||||||||||||||    
T  37288547 gtcattttaacaaattttatttgttttaaattatatgtcactttacaatat 37288497  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 40343294 - 40343376
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcc 245  Q
    |||||||||||| ||| ||||||| ||||||  ||||||||||||||||||| |||| || |||||||| || ||||||||||    
T  40343294 ttatatgtcattttagtaaaatttgtttattctaaattatatgtcactttacgatatcaaggaatcattaatttttattttcc 40343376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 37467303 - 37467224
Alignment:
Q  164 tatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttattttcct 246  Q
    |||||||||||||| |||||||  ||| || ||||||||  ||||||||| |||||  |||||||||| ||||||||||||||    
T  37467303 tatatgtcattctaacaaaattg-tttgttgcaaattat--gtcactttaaaatatccaagaatcattaatgtttattttcct 37467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 22597117 - 22597150
Alignment:
Q  196 aaattatatgtcactttacaatatgaaagaatca 229  Q
    |||||||||||||||||||||||| |||||||||    
T  22597117 aaattatatgtcactttacaatataaaagaatca 22597150  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 9001595 - 9001669
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    |||||||||||| || |||||||| ||| ||| |||||||||||||||||||||||| || |||||||| |||||    
T  9001595 ttatatgtcattttaacaaaatttgtttgttttaaattatatgtcactttacaatatcaatgaatcattaatgtt 9001669  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 21937922 - 21938002
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtttatttt 243  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||| |||| ||||| || |||||||| ||| |||||||    
T  21937922 ttatatgtcattctaacaaaatttatttgcctcaaattatatgtcattttataatatcaatgaatcattgatgcttatttt 21938002  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 6948007 - 6947947
Alignment:
Q  166 tatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaa 226  Q
    |||||||||||  |||||| ||||| | ||||||||||||||| |||||||||| ||||||    
T  6948007 tatgtcattctgacaaaatatatttgtatcaaattatatgtcaatttacaatatcaaagaa 6947947  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 4226288 - 4226341
Alignment:
Q  195 caaattatatgtcactttacaatatgaaagaatcattcatgtttattttcctat 248  Q
    ||||||||||||||||||||||||| || ||| |||| |||||  |||||||||    
T  4226288 caaattatatgtcactttacaatatcaatgaaacattaatgttacttttcctat 4226341  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 8543497 - 8543546
Alignment:
Q  152 tctgtcccactttatatgtcattctagcaaaatttatttatttcaaatta 201  Q
    ||||| ||||||||||||||||| ||||||||||| ||| || |||||||    
T  8543497 tctgttccactttatatgtcattttagcaaaatttgtttgttccaaatta 8543546  T

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