View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18740_high_5 (Length: 408)
Name: NF18740_high_5
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 36565587 - 36565968
Alignment:
| Q |
10 |
catcatcatcctcctacttaccacatatttgatatcaatatatagttaattggacagctaataaaatactaaccaaa--tatttgtatatataaactgac |
107 |
Q |
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| T |
36565587 |
catcatcatcctcctacttaccacatatttgatatcaata----gttaattggacaactattaaaatactaaccaaaaatatttgtatatataaactgac |
36565682 |
T |
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| Q |
108 |
attcataaataaagttaagagtaaaacccatccatttaaggtaatctcgttctataattttgctatgaatcctnnnnnnnncattttgcagtgaaccaaa |
207 |
Q |
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| T |
36565683 |
attcataaataaagttaagagtaaaacccatccatttaaggtaatctcgttctataattttgctatgaatcctaaaaaaaacattttgcagtgaaccaaa |
36565782 |
T |
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| Q |
208 |
gcaccgcaaaaactaacatttgtaaccattgcatacaatggtacctatgatattattagctacctcagttaaatgattaaatagtgtgggttgctgataa |
307 |
Q |
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| T |
36565783 |
gcaccgcaaaaactaacatttgtaaccattgcatacaatggtacctatgatattattagctacctcagttaaatgattaaatagtgtgggttgttgataa |
36565882 |
T |
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| Q |
308 |
aaaccatggaaaacctgaaattccaattcacagccaaacacgtctttgatgataaaccgaag-ttcaaattgaatgcatacaatat |
392 |
Q |
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| T |
36565883 |
caaccatggaaaacctgaaattccaattcacagccaaacacgtctttgatgataaaccgaagtttcaaattgaatgcatactatat |
36565968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 12844479 - 12844410
Alignment:
| Q |
293 |
gtgggttgctgataaaaaccatggaaaacctgaaattccaattcacagccaaacacgtctttgatgataaacc |
365 |
Q |
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| T |
12844479 |
gtgggttgttgataacaacaatgaaaagcc-gaaattccaattca--gccaaacatgtctttgatgataaacc |
12844410 |
T |
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