View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18740_high_7 (Length: 356)
Name: NF18740_high_7
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 36610909 - 36610556
Alignment:
| Q |
1 |
aaatagtttgtatggtaagtttgtgattgtttgattccttttcatctaattttttgagtgttttacttttattgtagggttgctatgtttgcattgttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36610909 |
aaatagtttgtatggtaagtttgtgattgtttgattccttttcatctaagtttttgattgttttacttttattgtagggttgctatgtttgcattgttac |
36610810 |
T |
|
| Q |
101 |
tggatactgtgaaggtggagacatgtgagtcttcggataatacctgtactaacgcagtaccatgtaaaattttatgagcccaaaaactcaattgtttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36610809 |
tggatactgtgaaggtggagacatgtgagtcttcggataatacctgtactaacgcagtaccatgtaaaattttatgagcccaaaaactcaattgtttaaa |
36610710 |
T |
|
| Q |
201 |
attctttatgttcattttctcttcaaatcttttcagagcagcattgatgaaaaaatcgaatggggcttactttcctgaagaggtattcttgtttatactt |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36610709 |
attctttatgttcgttttctcttcaaatcttttcagagcagcattgatgaaaaaatcgaatggggcttactttcctgaagaggtattcttgtttatactt |
36610610 |
T |
|
| Q |
301 |
tgactttcttaaattttgtatatttgttaaatattttgcttgctcatgttgata |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36610609 |
tgactttcttaaattttgtatatttgttaaatattttgcttgctcatgttgata |
36610556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 18641861 - 18641921
Alignment:
| Q |
72 |
ttgtagggttgctatgtttgcattgttactggatactgtgaaggtggagacatgtgagtct |
132 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18641861 |
ttgtagggttgctatgtctgcattgtcactggatactgtgaaggtggagacatgtgagtct |
18641921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University