View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18740_low_14 (Length: 239)
Name: NF18740_low_14
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 8985097 - 8984912
Alignment:
| Q |
50 |
gctaagacacgcaaaccagttgtggctcgcaatcttgtgcagcctggttcctttatggcaagcgcacgaggagctagcagggccggtatccatcaagagg |
149 |
Q |
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| T |
8985097 |
gctaagacacgcaaaccggttgtggctcgcaatcttgtgcaacctggttcctttatggcaagcgcacgaggagctagtagggccggtacccatcaagagg |
8984998 |
T |
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| Q |
150 |
aagccggaccaaaaaagagatctagaactgaaattgttgaagaaggcggcaatgataaggaggggcagaagactatgtctgtggtg |
235 |
Q |
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| T |
8984997 |
aagccggaccaaaaaagagatctagaactgaaattgctgaagaaggcggcactaataaggaggggcagaagactatgtctgtggtg |
8984912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 20583452 - 20583668
Alignment:
| Q |
18 |
aagataaggctccggcagcggtccagcatcacgctaagacacgcaaaccagttgtggctcgcaatcttgtgcagcctggttcctttatggcaagcgcacg |
117 |
Q |
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| T |
20583452 |
aagacaaggctccggcagcggtccagcatcacgccaagccgcgcaaaccagctgtggctcgcaacctagtgcagcctagatcttttatggcaagcgcacg |
20583551 |
T |
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| Q |
118 |
aggagctagcagggccggtatccatcaagaggaagccggaccaaaaaagagatctagaactgaaattgttgaagaaggcggcaatgataaggaggggcag |
217 |
Q |
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| T |
20583552 |
cggagctagca-ggccggtgcccatcaagaggaagctggaccgaaaaagagatctagaactgaaaatgctgaagatggcaacaatgatagggaggggcag |
20583650 |
T |
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| Q |
218 |
aagactatgtctgtggtg |
235 |
Q |
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| T |
20583651 |
aagattatgtctatggtg |
20583668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 21694617 - 21694735
Alignment:
| Q |
59 |
cgcaaaccagttgtggctcgcaatcttgtgcagcctggttcctttatggcaagcgcacgaggagctagcagggccggtatccatcaagaggaagccggac |
158 |
Q |
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||||| ||| |||||||||| |||| |||||||| || || ||| |||| || || |||| |||||||||| |||| |||||||||||||| |||| |
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| T |
21694617 |
cgcaagccaattgtggctcgaaatccagtgcagccaggctcttttctggccagtacaagaggcgctagcagggtcggtgcacatcaagaggaagcgggac |
21694716 |
T |
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| Q |
159 |
caaaaaagagatctagaac |
177 |
Q |
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| T |
21694717 |
cgaaaaaaagatctagaac |
21694735 |
T |
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