View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18740_low_15 (Length: 236)

Name: NF18740_low_15
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18740_low_15
NF18740_low_15
[»] chr3 (16 HSPs)
chr3 (38-115)||(42745070-42745147)
chr3 (13-92)||(37273141-37273220)
chr3 (6-97)||(21367667-21367759)
chr3 (53-128)||(45541618-45541693)
chr3 (38-92)||(24281079-24281133)
chr3 (48-122)||(34707450-34707524)
chr3 (6-114)||(39602172-39602280)
chr3 (37-92)||(5391910-5391965)
chr3 (49-115)||(2152139-2152205)
chr3 (49-91)||(21754760-21754802)
chr3 (38-115)||(43115088-43115165)
chr3 (38-86)||(3044249-3044297)
chr3 (3-115)||(14548682-14548794)
chr3 (38-114)||(26330285-26330361)
chr3 (38-86)||(29771870-29771918)
chr3 (54-98)||(54837012-54837056)
[»] chr6 (22 HSPs)
chr6 (38-97)||(33887862-33887921)
chr6 (56-114)||(26559201-26559259)
chr6 (38-115)||(7931687-7931764)
chr6 (48-116)||(4080958-4081026)
chr6 (6-114)||(20368142-20368250)
chr6 (38-122)||(34403887-34403971)
chr6 (48-123)||(769180-769255)
chr6 (52-115)||(27693400-27693463)
chr6 (3-98)||(31624087-31624182)
chr6 (39-98)||(1575928-1575987)
chr6 (6-85)||(2160928-2161007)
chr6 (38-97)||(4515992-4516051)
chr6 (38-92)||(30863278-30863332)
chr6 (38-115)||(2460112-2460189)
chr6 (31-92)||(3217174-3217235)
chr6 (62-107)||(5730733-5730778)
chr6 (38-82)||(6536979-6537023)
chr6 (3-115)||(8035109-8035221)
chr6 (38-86)||(9667975-9668023)
chr6 (53-97)||(10657449-10657493)
chr6 (40-92)||(30604930-30604982)
chr6 (55-103)||(33832246-33832294)
[»] chr7 (13 HSPs)
chr7 (4-97)||(19022563-19022657)
chr7 (56-122)||(6633914-6633980)
chr7 (3-114)||(33678777-33678889)
chr7 (39-98)||(15740389-15740448)
chr7 (48-114)||(34035959-34036026)
chr7 (55-122)||(36537957-36538024)
chr7 (3-92)||(12110357-12110446)
chr7 (26-114)||(21568456-21568545)
chr7 (53-122)||(30535610-30535679)
chr7 (41-86)||(39771796-39771841)
chr7 (39-92)||(44615088-44615141)
chr7 (30-97)||(11619136-11619204)
chr7 (74-122)||(23214923-23214971)
[»] chr8 (14 HSPs)
chr8 (38-115)||(13000385-13000462)
chr8 (34-114)||(11770973-11771053)
chr8 (5-113)||(41442416-41442524)
chr8 (49-114)||(8629499-8629564)
chr8 (6-86)||(11185221-11185301)
chr8 (48-99)||(779038-779089)
chr8 (54-97)||(4390261-4390304)
chr8 (9-92)||(7918430-7918513)
chr8 (38-88)||(41606891-41606941)
chr8 (2-87)||(2594986-2595071)
chr8 (39-92)||(30191125-30191178)
chr8 (31-91)||(1112260-1112320)
chr8 (36-92)||(9835884-9835940)
chr8 (38-114)||(30918145-30918220)
[»] chr2 (28 HSPs)
chr2 (4-97)||(26202026-26202120)
chr2 (39-115)||(8187414-8187490)
chr2 (23-115)||(24347739-24347831)
chr2 (30-96)||(28039312-28039378)
chr2 (5-87)||(29316764-29316846)
chr2 (38-115)||(42817337-42817414)
chr2 (36-92)||(10285890-10285946)
chr2 (38-122)||(14666580-14666664)
chr2 (38-97)||(41817200-41817259)
chr2 (38-104)||(1647268-1647334)
chr2 (4-58)||(20952353-20952407)
chr2 (4-97)||(43279507-43279601)
chr2 (53-122)||(5902503-5902572)
chr2 (48-97)||(12140574-12140623)
chr2 (7-92)||(40158719-40158804)
chr2 (7-60)||(40279408-40279461)
chr2 (33-86)||(41809235-41809288)
chr2 (40-97)||(43530090-43530147)
chr2 (53-98)||(44606088-44606133)
chr2 (13-85)||(1939323-1939395)
chr2 (38-86)||(7283028-7283076)
chr2 (13-97)||(8017441-8017525)
chr2 (3-79)||(16867736-16867812)
chr2 (3-71)||(29628748-29628816)
chr2 (38-86)||(34652026-34652074)
chr2 (75-123)||(40481903-40481951)
chr2 (75-123)||(40512577-40512625)
chr2 (39-115)||(41041983-41042059)
[»] chr4 (16 HSPs)
chr4 (39-92)||(20936213-20936266)
chr4 (38-121)||(1137744-1137827)
chr4 (3-71)||(49202642-49202710)
chr4 (13-113)||(53673621-53673721)
chr4 (33-92)||(1965968-1966027)
chr4 (38-97)||(28300278-28300337)
chr4 (6-92)||(2996573-2996659)
chr4 (3-97)||(23459625-23459719)
chr4 (38-92)||(46110235-46110289)
chr4 (40-97)||(22662226-22662283)
chr4 (38-115)||(27123313-27123390)
chr4 (63-120)||(45214428-45214485)
chr4 (39-87)||(6466035-6466083)
chr4 (38-114)||(23819121-23819197)
chr4 (42-86)||(29263406-29263450)
chr4 (55-115)||(42641600-42641660)
[»] chr1 (23 HSPs)
chr1 (25-120)||(6262039-6262134)
chr1 (48-114)||(7119899-7119965)
chr1 (3-89)||(7218061-7218147)
chr1 (29-114)||(14443472-14443557)
chr1 (33-122)||(17420230-17420319)
chr1 (39-92)||(35925723-35925776)
chr1 (30-97)||(15942726-15942794)
chr1 (36-92)||(31118073-31118129)
chr1 (3-86)||(29007706-29007789)
chr1 (3-114)||(34290233-34290344)
chr1 (34-97)||(35669000-35669063)
chr1 (4-97)||(3233993-3234087)
chr1 (27-112)||(41184613-41184699)
chr1 (38-115)||(4868432-4868508)
chr1 (3-84)||(10809342-10809423)
chr1 (48-97)||(29635389-29635438)
chr1 (6-71)||(38503470-38503535)
chr1 (55-91)||(19389951-19389987)
chr1 (5-97)||(26779905-26779996)
chr1 (38-98)||(33108600-33108660)
chr1 (41-97)||(37811887-37811943)
chr1 (48-92)||(42336657-42336701)
chr1 (26-97)||(51929517-51929589)
[»] chr5 (17 HSPs)
chr5 (39-97)||(499710-499768)
chr5 (5-97)||(17368675-17368767)
chr5 (3-92)||(34205236-34205327)
chr5 (3-114)||(37588322-37588433)
chr5 (71-114)||(39983696-39983739)
chr5 (3-97)||(15402808-15402902)
chr5 (4-97)||(29925839-29925933)
chr5 (31-92)||(4619732-4619793)
chr5 (55-92)||(5531083-5531120)
chr5 (38-115)||(6593331-6593408)
chr5 (3-60)||(15074765-15074822)
chr5 (3-115)||(2568655-2568767)
chr5 (38-110)||(8089968-8090040)
chr5 (39-115)||(18857359-18857435)
chr5 (3-79)||(33533536-33533612)
chr5 (12-92)||(37611199-37611279)
chr5 (12-92)||(37787929-37788009)
[»] scaffold0286 (1 HSPs)
scaffold0286 (6-85)||(16110-16189)
[»] scaffold0147 (1 HSPs)
scaffold0147 (38-92)||(12688-12742)


Alignment Details
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 42745070 - 42745147
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||||| ||||||||||| |||||| | |||||||    
T  42745070 cttatggaaataagatgaaaacaacttatgaacatgtcataagttgtttacataaattcttctaaataatatcacaag 42745147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 37273141 - 37273220
Alignment:
Q  13 tgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||| | || ||| ||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| |||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataa 37273220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 21367667 - 21367759
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaac-atatcataagttgttttcataaattct 97  Q
    |||||||||||||| | || ||| ||||| |||||||| || |||| |||||||| ||||||||| || ||||||| ||||||||||| ||||    
T  21367667 tataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttct 21367759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 45541618 - 45541693
Alignment:
Q  53 tgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttatatcatt 128  Q
    |||||||| ||| ||||||| ||||||| ||||||||||| ||||| |||| ||||| ||||| ||||||| ||||    
T  45541618 tgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccatt 45541693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 24281079 - 24281133
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||| || ||||||||||||||||| || | ||||||||||||||||||||||    
T  24281079 cttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataa 24281133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 34707524 - 34707450
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    ||||||||||||||||| || |||| ||| |||||||||||| || |||| | ||| ||||||||||||| ||||    
T  34707524 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 34707450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 39602280 - 39602172
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaata 105  Q
    |||||| ||||||| | || ||| || || |||||||| || |||||||||||||| || ||||||| ||||||| ||| |||||||  ||||  |||||    
T  39602280 tataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctcttccaaata 39602181  T
Q  106 gtctcacaa 114  Q
    | |||||||    
T  39602180 gcctcacaa 39602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 5391910 - 5391965
Alignment:
Q  37 acttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||| || ||||||||||||| ||| ||||||| ||||||| |||||||||||    
T  5391910 acttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 5391965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 2152205 - 2152139
Alignment:
Q  49 aagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||||||||||| |||  |||||| |||||||||||||||||||| | | | || ||||||||||||    
T  2152205 aagttgaaaacagcttacgaacatgtcataagttgttttcataaaatatctcaattagtctcacaag 2152139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 21754760 - 21754802
Alignment:
Q  49 aagttgaaaacaacttgtgaacatatcataagttgttttcata 91  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  21754760 aagttgaaaacaactgatgaacatgtcataagttgttttcata 21754802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 43115088 - 43115165
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||||||| |||| ||||||||| || || |||| ||||||||||||| |||||| ||||  ||| | |||||||||    
T  43115088 cttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaag 43115165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 3044297 - 3044249
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    |||||| || ||||||||||||| ||| ||||||| |||||||||||||    
T  3044297 cttatgaaaataagttgaaaacagcttatgaacatgtcataagttgttt 3044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 14548794 - 14548682
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 102  Q
    ||||||||||||||||| | || |||  |||| | ||||||||| |||| |||||||| | | | || || ||||| |||||||||||||  ||| | ||    
T  14548794 agctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctctctcaa 14548695  T
Q  103 atagtctcacaag 115  Q
    | |||||||||||    
T  14548694 acagtctcacaag 14548682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 26330361 - 26330285
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    ||||||||| |||  |||||| ||| | ||||||| ||| |||||||||||||||  |||| |||| ||||||||||    
T  26330361 cttatggaaataacctgaaaagaacctatgaacatgtcagaagttgttttcataagctcttctaaacagtctcacaa 26330285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 29771870 - 29771918
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    ||||||||| ||||||||||||||||| || |||| || ||||||||||    
T  29771870 cttatggaaataagttgaaaacaacttatggacatgtcctaagttgttt 29771918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 54837056 - 54837012
Alignment:
Q  54 gaaaacaacttgtgaacatatcataagttgttttcataaattctt 98  Q
    |||||||| || ||||||| ||||||| |||||||||||||||||    
T  54837056 gaaaacaagttatgaacatgtcataagctgttttcataaattctt 54837012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 33887862 - 33887921
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  33887862 cttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattct 33887921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 26559259 - 26559201
Alignment:
Q  56 aaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||| ||||||||||    
T  26559259 aaacagcttgtgaacatatcataagttgttttcataagttcttccaaacagtctcacaa 26559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 7931764 - 7931687
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||| |||| |||| ||||||||||||  |||||| |||||||||||||||||||  |||| ||||| ||||||||||    
T  7931764 cttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaatggtctcacaag 7931687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 4080958 - 4081026
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagc 116  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||| ||| | |||||||  |||||||    
T  4080958 taagttgaaaacaacttatgaacatggcataagttgttttcataaaatctctcaaatagtgccacaagc 4081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 20368250 - 20368142
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaata 105  Q
    |||||||||||||| | || | | ||||| |||||||| || ||||||||||  | ||| ||||||| ||||||||||||||||||| ||||   |||||    
T  20368250 tataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttctcccaaata 20368151  T
Q  106 gtctcacaa 114  Q
    |||| ||||    
T  20368150 gtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 34403887 - 34403971
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    ||||||||| |||| |||||||| ||| ||||||| ||||||||||||||| ||| ||||  |||| ||||| ||||| ||||||    
T  34403887 cttatggaaataaggtgaaaacaccttatgaacatgtcataagttgttttcttaacttctcctaaacagtctaacaagtgtttat 34403971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 769180 - 769255
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttata 123  Q
    ||||||||||||| ||| ||||||| ||||||| ||||||||||| ||| |  ||| ||||||||||| |||||||    
T  769180 taagttgaaaacagcttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaagtgtttata 769255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 27693463 - 27693400
Alignment:
Q  52 ttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||||| | ||| ||||||| ||||||||||||| |||||||||| | |||||||||||||||    
T  27693463 ttgaaaatagcttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaag 27693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 31624087 - 31624182
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 98  Q
    ||||||||| ||||||| |  | ||| ||||| || ||||| || ||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||    
T  31624087 agctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttctt 31624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 1575928 - 1575987
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 98  Q
    ||||| || |||||| |||||| ||| ||||||| ||||||||||||||||||| |||||    
T  1575928 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 1575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 2161007 - 2160928
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgtt 85  Q
    |||||||||||||||| || | | |||||||  |||||||| ||||||||||||||||| || |||| || |||| ||||    
T  2161007 tataagttgttttcctaagctgtcttggaaagattatggaaataagttgaaaacaacttatggacatgtcgtaaggtgtt 2160928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 4515992 - 4516051
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    |||| |||| ||||||||||||||||  ||||||||| | ||||||||| ||||||||||    
T  4515992 cttacggaaataagttgaaaacaactcatgaacatataagaagttgtttacataaattct 4516051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 30863278 - 30863332
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||| ||| |||| |||||||||||| || |||| |||||||||||||||||||    
T  30863278 cttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataa 30863332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 2460189 - 2460112
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||||||| |||||||||||||||||    |||| ||||||||||||| |||||  ||| | ||| |||||||||||    
T  2460189 cttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaag 2460112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 3217235 - 3217174
Alignment:
Q  31 tggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||||||||||| |||| |||||||||||| |  || | |||| ||||||||||||||    
T  3217235 tggaaaacttatggaaataagctgaaaacaacttatcgacgtgtcatcagttgttttcataa 3217174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 5730733 - 5730778
Alignment:
Q  62 cttgtgaacatatcataagttgttttcataaattcttttaaatagt 107  Q
    ||||||||||| ||||||||||||| |||||| ||||| |||||||    
T  5730733 cttgtgaacatgtcataagttgtttccataaactctttcaaatagt 5730778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 6536979 - 6537023
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagtt 82  Q
    ||||||||| |||| |||||||||||| ||||||| |||||||||    
T  6536979 cttatggaaataagctgaaaacaacttatgaacatgtcataagtt 6537023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 8035221 - 8035109
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 102  Q
    ||||| ||||||||||| | || |||  | |||| |||| | || |||||||||||||| || ||| ||| ||||||||||||||| ||| ||||   ||    
T  8035221 agctagaagttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgttttcttaagttctcccaa 8035122  T
Q  103 atagtctcacaag 115  Q
    |||||||| ||||    
T  8035121 atagtctctcaag 8035109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 9668023 - 9667975
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    ||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  9668023 cttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 9667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 10657449 - 10657493
Alignment:
Q  53 tgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    |||||||||||| ||||||| | |||| |||||||||||||||||    
T  10657449 tgaaaacaacttatgaacatgttataaattgttttcataaattct 10657493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 30604930 - 30604982
Alignment:
Q  40 tatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||| ||||||||||| ||||| ||||||| ||||| |||||||| ||||    
T  30604930 tatggaaataagttgaaaagaacttatgaacatttcataggttgttttaataa 30604982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 33832294 - 33832246
Alignment:
Q  55 aaaacaacttgtgaacatatcataagttgttttcataaattcttttaaa 103  Q
    |||||||||| | ||||| ||||||||||||||||||| |||| |||||    
T  33832294 aaaacaacttataaacatgtcataagttgttttcataagttctcttaaa 33832246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 19022657 - 19022563
Alignment:
Q  4 gctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 97  Q
    |||||||||||||||  | || ||||||||| |||||||| || ||||||||| ||||||| |||| | | ||||||||||||||||||||||||    
T  19022657 gctataagttgtttttataagctatattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagttgttttcataaattct 19022563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 6633914 - 6633980
Alignment:
Q  56 aaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    |||||||||||| |||| ||||||||||||| |||||||||||  | | |||||||||||| |||||    
T  6633914 aaacaacttgtggacatttcataagttgtttccataaattcttccatacagtctcacaagcatttat 6633980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 33678777 - 33678889
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaac-atatcataagttgttttcataaattctttta 101  Q
    ||||||||| ||||||| | || ||| ||||||||||| || || ||||||||||||| ||  ||||| || | ||||||||||||||||| ||||   |    
T  33678777 agctataagctgttttcataagctatcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttataagttgttttcataagttctccca 33678876  T
Q  102 aatagtctcacaa 114  Q
    ||| |||||||||    
T  33678877 aattgtctcacaa 33678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 15740448 - 15740389
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 98  Q
    ||||| || |||||| |||||| ||| ||||||| ||||||||||||||||||| |||||    
T  15740448 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 15740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 34035959 - 34036026
Alignment:
Q  48 taagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    ||||||||||||||||| |||||| | ||||||||| ||||||||| |||||  || |||||||||||    
T  34035959 taagttgaaaacaacttatgaacaatgtcataagttattttcataagttcttccaagtagtctcacaa 34036026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 36537957 - 36538024
Alignment:
Q  55 aaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    |||||||||| ||||||| ||||||||||||| ||||| |||| | ||| | ||||||||| ||||||    
T  36537957 aaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttat 36538024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 12110357 - 12110446
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||||| ||||||| | || ||| ||| | |||||||| || |||  | ||||||  |||||||||| |||||||||||||||||||    
T  12110357 agctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtgaacatgtcataagttgttttcataa 12110446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 21568545 - 21568456
Alignment:
Q  26 tatattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    ||||||||| ||||||||||||||||||||||| | ||| |||| | | | ||||| ||||||||||| ||||   ||| ||||||||||    
T  21568545 tatattggagaacttatggaactaagttgaaaagagcttatgaaaattgttataagctgttttcataagttctcccaaacagtctcacaa 21568456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 30535610 - 30535679
Alignment:
Q  53 tgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    |||||||| |||  |||||||||||||||||||||||||| ||||   ||| |||||| |||| ||||||    
T  30535610 tgaaaacagcttacgaacatatcataagttgttttcataagttctccaaaacagtctctcaagtgtttat 30535679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 39771796 - 39771841
Alignment:
Q  41 atggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    |||||| ||||||||||||| ||| || ||||||||||||||||||    
T  39771796 atggaaataagttgaaaacagcttatggacatatcataagttgttt 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 44615141 - 44615088
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||| |||  |||||||| |||||| |||| |||||||||||||||||||    
T  44615141 ttatggaaataacgtgaaaacagcttgtggacatgtcataagttgttttcataa 44615088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 11619204 - 11619136
Alignment:
Q  30 ttggaaaacttatggaactaagttgaaaacaacttgtgaacata-tcataagttgttttcataaattct 97  Q
    ||||| |||||||| || ||||||||||| | ||| |||| ||  ||||||||||||||||||||||||    
T  11619204 ttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagttgttttcataaattct 11619136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 23214923 - 23214971
Alignment:
Q  74 tcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    |||||||||||||||||||||||| | ||| ||||||| ||| ||||||    
T  23214923 tcataagttgttttcataaattctctcaaacagtctcataagtgtttat 23214971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 13000462 - 13000385
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||||||| |||| ||||||||||||||| |||| ||||||||||||  |||||| ||||  |||||||||||||||    
T  13000462 cttatggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaag 13000385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 11771053 - 11770973
Alignment:
Q  34 aaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    |||||||||  || ||||||||||||||| | |  |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  11771053 aaaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacagtctaacaa 11770973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 41442524 - 41442416
Alignment:
Q  5 ctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaat 104  Q
    ||||||| ||||||| | || |||||||||||||||||  |  |||| |||||||| | | ||||||| |||||| |||||||||||| |||| | |||     
T  41442524 ctataagctgttttcataagctatattggaaaacttatataggtaagctgaaaacagcatatgaacatgtcataaattgttttcataagttctgtcaaac 41442425  T
Q  105 agtctcaca 113  Q
    |||||||||    
T  41442424 agtctcaca 41442416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 8629499 - 8629564
Alignment:
Q  49 aagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||| |||| | |||  |||||||||    
T  8629499 aagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctcaaacggtctcacaa 8629564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 11185221 - 11185301
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    |||||||||||||| |||| |||  |||| | || |||||| ||||||||||||||||| ||||||| | ||||| |||||    
T  11185221 tataagttgttttcgttagctatcatggagagctgatggaaataagttgaaaacaacttatgaacatgttataagatgttt 11185301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 779089 - 779038
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttt 99  Q
    |||| |||||||||||| ||||||| ||||||||||||||| ||| ||||||    
T  779089 taagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttcttt 779038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 4390261 - 4390304
Alignment:
Q  54 gaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  4390261 gaaaacaacttatgaacatgccataagttgttttcataaattct 4390304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 7918513 - 7918430
Alignment:
Q  9 aagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||||||| | || ||| ||||| | ||||| ||| ||||||| ||||| ||| ||||||| || ||||||||||||||||    
T  7918513 aagttgttttcgtaagctatcttggagagcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataa 7918430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 41606941 - 41606891
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttc 88  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||| |||||||    
T  41606941 cttatggaaataagctgaaaacaacttttgaacatgtcataagctgttttc 41606891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 2595071 - 2594986
Alignment:
Q  2 tagctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgtttt 87  Q
    |||| ||||||||||||| | || |  ||| || ||||||||  | |||| |||||||||||| ||||||| ||||||||||||||    
T  2595071 tagccataagttgttttcataagctgcattagacaacttatgagaataagctgaaaacaacttatgaacatgtcataagttgtttt 2594986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 30191178 - 30191125
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||| |||| ||||||||| || ||||||| ||||||||||||| |||||    
T  30191178 ttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataa 30191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 1112260 - 1112320
Alignment:
Q  31 tggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcata 91  Q
    |||| ||||||||||| |||||||||||||| || ||| ||  ||||||||||||| ||||    
T  1112260 tggagaacttatggaaataagttgaaaacaagttatgagcaggtcataagttgtttccata 1112320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 9835940 - 9835884
Alignment:
Q  36 aacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||||||| |||| |||||||| ||| ||||||| ||||||| ||||| |||||    
T  9835940 aacttatggaaataagatgaaaacagcttatgaacatgtcataagctgtttacataa 9835884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 30918145 - 30918220
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    ||||||||| |||| |||||||||||| |||| || ||| |||||||||||||||  ||| | ||| ||||||||||    
T  30918145 cttatggaaataagctgaaaacaacttatgaa-atgtcacaagttgttttcataagctctctcaaacagtctcacaa 30918220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 26202026 - 26202120
Alignment:
Q  4 gctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 97  Q
    |||||||||||||||  | |||||||||||| |||||||| || ||||||||||| | ||| |||| | | |||||||||||| |||||||||||    
T  26202026 gctataagttgtttttataagatatattggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttctcataaattct 26202120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 8187490 - 8187414
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||||||| |||  ||||||||||||| ||| || ||||||||||| ||||||| |||||| ||| |||||||||||    
T  8187490 ttatggaaataacctgaaaacaacttgcgaaaatttcataagttgtattcataagttctttcaaacagtctcacaag 8187414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 24347739 - 24347831
Alignment:
Q  23 agatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||||||||||| |||||||| || |||| |||| |   ||| ||||| |||||||||||| |||||||| |||| | |||||||||||||||    
T  24347739 agatatattggagaacttatgaaaataagctgaatatggcttatgaacctatcataagttgctttcataagttctctgaaatagtctcacaag 24347831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 28039378 - 28039312
Alignment:
Q  30 ttggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattc 96  Q
    |||||||| |||||||| |||| |||||||| ||| ||||||  |||||| ||||||||||||||||    
T  28039378 ttggaaaagttatggaaataagctgaaaacagcttatgaacaagtcataacttgttttcataaattc 28039312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 29316846 - 29316764
Alignment:
Q  5 ctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgtttt 87  Q
    ||||||| ||||||| | || ||| ||||| ||||||||||| |||| |||||| ||||| ||||||| ||||||| ||||||    
T  29316846 ctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatgtcataagctgtttt 29316764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 42817414 - 42817337
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||||||| |||| | ||||||||||  ||||||  | ||||||||||||||||| |||  ||||||||||||||||    
T  42817414 cttatggaagtaagctaaaaacaacttaagaacatgccgtaagttgttttcataaactctactaaatagtctcacaag 42817337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 10285890 - 10285946
Alignment:
Q  36 aacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||||||| ||||||||||||| ||| || |||| ||||||||| |||||||||    
T  10285890 aacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataa 10285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 14666580 - 14666664
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    |||||| || |||| |||||||||| | ||||||| ||||||||||||| |||| |||||| | ||  |||||||||| ||||||    
T  14666580 cttatgaaaataaggtgaaaacaacctatgaacatgtcataagttgtttccatatattcttctgaaacgtctcacaagtgtttat 14666664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 41817200 - 41817259
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||| |||| ||||||||| || | ||||| ||||||| ||||||||||||||||    
T  41817200 cttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataaattct 41817259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 1647268 - 1647334
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaat 104  Q
    ||||||||| |||| |||||||| ||| ||| ||| ||||||| ||||||||||| ||||| |||||    
T  1647268 cttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttcttctaaat 1647334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 20952353 - 20952407
Alignment:
Q  4 gctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaa 58  Q
    |||||||||||||||  |||| ||||||||| |||||||| || |||||||||||    
T  20952353 gctataagttgtttttattagctatattggagaacttatgaaaataagttgaaaa 20952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 43279601 - 43279507
Alignment:
Q  4 gctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 97  Q
    |||||||||||||||  | || ||||||||| ||||| || || ||||||||||| | ||| |||| | | ||||||| ||||||||||||||||    
T  43279601 gctataagttgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcataaattct 43279507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 5902572 - 5902503
Alignment:
Q  53 tgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    ||||||||  || ||||||| ||||||| ||||||||||| |||||  ||| ||||||||||| ||||||    
T  5902572 tgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttat 5902503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 12140574 - 12140623
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||| ||||||||| || || ||||||||||||||||||| ||||    
T  12140574 taagttgaagacaacttgtaaaaatgtcataagttgttttcataagttct 12140623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 40158719 - 40158804
Alignment:
Q  7 ataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||||||||| | || |||  |||| | |||||| || |||| |||||||||||| | ||||| ||||||| |||||||||||    
T  40158719 ataagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataa 40158804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 40279408 - 40279461
Alignment:
Q  7 ataagttgttttccttagatatattggaaaacttatggaactaagttgaaaaca 60  Q
    ||||||||||||| | || ||||||||| |||||||| || |||||||||||||    
T  40279408 ataagttgttttcataagctatattggagaacttatgaaaataagttgaaaaca 40279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 41809288 - 41809235
Alignment:
Q  33 gaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    |||| ||||||||| |||| | |||||||||| ||||||| |||||||||||||    
T  41809288 gaaagcttatggaaataagctaaaaacaacttatgaacatgtcataagttgttt 41809235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 43530147 - 43530090
Alignment:
Q  40 tatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||| ||||||||||| | ||||||||||| ||||||  ||||||||||| ||||    
T  43530147 tatggaaataagttgaaaatagcttgtgaacatgtcataatctgttttcataagttct 43530090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 44606133 - 44606088
Alignment:
Q  53 tgaaaacaacttgtgaacatatcataagttgttttcataaattctt 98  Q
    |||||||||||| || |||| ||||||||||||||||||| |||||    
T  44606133 tgaaaacaacttatggacatgtcataagttgttttcataagttctt 44606088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 1939395 - 1939323
Alignment:
Q  13 tgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgtt 85  Q
    ||||||| | || |||| |||| | ||||||||| ||||||||||||| ||| || |||| ||||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 7283028 - 7283076
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    ||||||||  |||| |||||||||||| || ||||||||||||||||||    
T  7283028 cttatggatataagatgaaaacaacttatggacatatcataagttgttt 7283076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 8017441 - 8017525
Alignment:
Q  13 tgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||| | || ||| ||||| |||||||| || || |  |||||||| || ||||||||||||||| ||||||||||| ||||    
T  8017441 tgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttcataagttct 8017525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 16867736 - 16867812
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataa 79  Q
    ||||||||| |||||||   || ||| ||||| | ||||||||| ||||||||||||||||| |||| || ||||||    
T  16867736 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 16867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 29628816 - 29628748
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca 71  Q
    |||||||||||||| || | || ||| |||||||| |||||||| |||| ||||||||| || ||||||    
T  29628816 agctataagttgttctcataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 29628748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 34652074 - 34652026
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    ||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  34652074 cttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 34652026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 40481903 - 40481951
Alignment:
Q  75 cataagttgttttcataaattcttttaaatagtctcacaagcgtttata 123  Q
    |||||| ||||| |||||| ||||| ||||||||||||||| |||||||    
T  40481903 cataagctgtttccataaactctttgaaatagtctcacaagtgtttata 40481951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 40512577 - 40512625
Alignment:
Q  75 cataagttgttttcataaattcttttaaatagtctcacaagcgtttata 123  Q
    |||||| ||||| |||||| ||||| ||||||||||||||| |||||||    
T  40512577 cataagctgtttccataaactctttgaaatagtctcacaagtgtttata 40512625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 41042059 - 41041983
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||||||| ||||||||||||| ||  || |||| | |||||||||||  ||||||||| | ||| |||||||||||    
T  41042059 ttatggaaataagttgaaaacagctgatggacatgtaataagttgtttctataaattctctgaaacagtctcacaag 41041983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 20936266 - 20936213
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||| |||| |||||||| ||| |||||||||||||||||||||||||||    
T  20936266 ttatggaaataaggtgaaaacagcttatgaacatatcataagttgttttcataa 20936213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 1137744 - 1137827
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgttta 121  Q
    ||||||||| |||  |||||||||||| ||||||| ||||||| ||||||||||| ||||  |||| ||| ||||||| |||||    
T  1137744 cttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagtgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 49202642 - 49202710
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca 71  Q
    ||||||||||||||||| | || ||| ||||| |||| ||| || ||||||||||||||||| ||||||    
T  49202642 agctataagttgttttcgtaagctatcttggataactaatgaaaataagttgaaaacaacttatgaaca 49202710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 53673721 - 53673621
Alignment:
Q  13 tgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcac 112  Q
    ||||||| | || ||| ||||| | |||||| || |||| |||||||||||| || |||||| ||| ||||||| |||||| || ||||||||| |||||    
T  53673721 tgttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgttgtttccataaactcgtttaaatagcctcac 53673622  T
Q  113 a 113  Q
    |    
T  53673621 a 53673621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 1965968 - 1966027
Alignment:
Q  33 gaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||| ||| ||||| |||||| |||||| ||| ||||||| |||||||||||||||||||    
T  1965968 gaaatcttctggaaataagttaaaaacagcttatgaacatgtcataagttgttttcataa 1966027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 28300337 - 28300278
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    |||||| || |||||||||||||||||  |||||| ||||| | ||||||||||||||||    
T  28300337 cttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataaattct 28300278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 2996573 - 2996659
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||||||||| | || ||| ||||| | | |||| || ||||||||||| | ||| || |||| |||||||||||||||||||    
T  2996573 tataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataa 2996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 23459625 - 23459719
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||| ||||||| | ||| || ||| |||||||||| |  ||||||||||| ||||| | ||||| ||||||| | ||||||||| ||||    
T  23459625 agctataagctgttttcataagagatcttgaaaaacttatgaatataagttgaaaataacttattaacatgtcataagcttttttcataagttct 23459719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 46110235 - 46110289
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||| ||| |||| |||||||||||| |||  ||||||||||||||||||||||    
T  46110235 cttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataa 46110289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 22662283 - 22662226
Alignment:
Q  40 tatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||| |||| |||||| | ||| ||||||||||||||||| ||||||||| ||||    
T  22662283 tatggaaataagctgaaaatagcttatgaacatatcataagtttttttcataagttct 22662226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 27123390 - 27123313
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||||||| |||||||||||||||||    |||| ||||||||||||| |||||  ||| | ||| |||||||||||    
T  27123390 cttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaag 27123313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 45214428 - 45214485
Alignment:
Q  63 ttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgttt 120  Q
    |||||||| | |||||||||| |||||||| |||| | |||||||| |||||||||||    
T  45214428 ttgtgaacgtgtcataagttgatttcataagttctctcaaatagtcgcacaagcgttt 45214485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 6466083 - 6466035
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgtttt 87  Q
    |||||||| ||||||||||| | ||| ||||||| ||||||||||||||    
T  6466083 ttatggaaataagttgaaaatagcttatgaacatctcataagttgtttt 6466035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 23819121 - 23819197
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    ||||| ||| |||| |||||||||||| || |||| ||||||| ||||||| |||| ||||  ||| ||||||||||    
T  23819121 cttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaacagtctcacaa 23819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 29263406 - 29263450
Alignment:
Q  42 tggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    ||||| |||| |||||||||||| ||||||||||||||| |||||    
T  29263406 tggaaataagctgaaaacaacttatgaacatatcataagctgttt 29263450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 42641660 - 42641600
Alignment:
Q  55 aaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||||| ||||||||||| ||||||| ||||||||||| |||||  ||| ||| |||||||    
T  42641660 aaaacagcttgtgaacatgtcataaggtgttttcataagttcttgaaaacagtatcacaag 42641600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 6262039 - 6262134
Alignment:
Q  25 atatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgttt 120  Q
    |||| ||||| | ||| ||||| ||||||||||| | ||| ||||||| |||||||||||| ||||||  |||| |||| ||||||||||| ||||    
T  6262039 atattttggagagcttgtggaaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctcttgtaaacagtctcacaagtgttt 6262134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 7119965 - 7119899
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    |||| ||||| || ||| |||| ||||||||||||||||||||||||||||  ||| ||||||||||    
T  7119965 taagctgaaagcagcttatgaagatatcataagttgttttcataaattcttgcaaacagtctcacaa 7119899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 7218147 - 7218061
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttca 89  Q
    ||||||||||||||||| | |  |||  |||| |||||||| || ||||||||||||| ||||||||| | |||||||| |||||||    
T  7218147 agctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtgaacgtgtcataagtcgttttca 7218061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 14443472 - 14443557
Alignment:
Q  29 attggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    |||||| || ||||| || |||| ||||||||||||  |||||| | | ||| |||||||||||||||||| | ||||||||||||    
T  14443472 attggagaatttatgaaaataaggtgaaaacaacttacgaacatgttaaaagctgttttcataaattctttcatatagtctcacaa 14443557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 17420230 - 17420319
Alignment:
Q  33 gaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 122  Q
    ||||||| |||||| |||||||||||||| || || |||| | |||||||||||||||||  ||||  ||| ||||| ||||| ||||||    
T  17420230 gaaaactaatggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttat 17420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 35925723 - 35925776
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||| ||||||||||||| ||| ||||||| ||||||| |||||||||||    
T  35925723 ttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 15942794 - 15942726
Alignment:
Q  30 ttggaaaacttatggaactaagttgaaaacaa-cttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||| ||||||| ||| |||| ||||||||  ||| ||||||| ||||||||||||||||||||||||    
T  15942794 ttggagaacttattgaaataagctgaaaacatgcttatgaacatgtcataagttgttttcataaattct 15942726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 31118073 - 31118129
Alignment:
Q  36 aacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||||||| |||| |||||||||||  ||||||| ||||||| |||||||||||    
T  31118073 aacttatggaaataagctgaaaacaactgatgaacatgtcataagatgttttcataa 31118129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 29007789 - 29007706
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttt 86  Q
    ||||||||||||||||| |  | ||  ||| ||| ||||| ||| |||| |||||||||||| |||||||||||||| ||||||    
T  29007789 agctataagttgttttcatcggctactttgaaaagcttatcgaaataagctgaaaacaacttatgaacatatcataaattgttt 29007706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 34290233 - 34290344
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 102  Q
    ||||||||| ||||||| | || ||| ||| | |||||||| || |||| |||||||||||| |||| || ||||||| | |||| |||||||||   ||    
T  34290233 agctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtcataagcttttttaataaattctcccaa 34290332  T
Q  103 atagtctcacaa 114  Q
    ||||| ||||||    
T  34290333 atagtttcacaa 34290344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 35669000 - 35669063
Alignment:
Q  34 aaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    |||| |||||||| |||||||||||||| || || |||||||||||| || |||||||| ||||    
T  35669000 aaaatttatggaaataagttgaaaacaatttatggacatatcataagctgctttcataagttct 35669063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 3234087 - 3233993
Alignment:
Q  4 gctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 97  Q
    |||||||||||||||  | || ||||||||| |||||||| || ||||| ||||| ||||| |||| | | | ||||||||||||||||| ||||    
T  3234087 gctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttatgaaaactgttataagttgttttcataagttct 3233993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 41184699 - 41184613
Alignment:
Q  27 atattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattcttttaaatagtctcac 112  Q
    ||||||||||||||||| || ||||||||||| ||||| |||| | | ||||||| | ||||||||| ||||  |||| ||||||||    
T  41184699 atattggaaaacttatgaaaataagttgaaaaaaacttatgaaaattgtcataagctattttcataagttctagtaaacagtctcac 41184613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 4868432 - 4868508
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||||| || ||||||||||||||||| |  |||| |||||||||| ||||||||| ||| | ||| |||||||||||    
T  4868432 cttatgtaaataagttgaaaacaacttattgacatgtcataagttg-tttcataaactctctcaaacagtctcacaag 4868508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 10809342 - 10809423
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgt 84  Q
    |||||||||||||| || | || ||||||||| |||||||| || |||| ||||||||  || | ||||| |||||||||||    
T  10809342 agctataagttgttctcatcagctatattggagaacttatgaaaataagctgaaaacatattataaacatgtcataagttgt 10809423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 29635389 - 29635438
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    |||| |||||||||||| | ||||| |||||| |||||||||||||||||    
T  29635389 taagctgaaaacaacttataaacatgtcataacttgttttcataaattct 29635438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 38503535 - 38503470
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca 71  Q
    |||||||||||||  |||| ||| ||||| |||||||| || |||| |||||||||||| ||||||    
T  38503535 tataagttgtttttgttagctatcttggagaacttatgaaaataagctgaaaacaacttatgaaca 38503470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 19389951 - 19389987
Alignment:
Q  55 aaaacaacttgtgaacatatcataagttgttttcata 91  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  19389951 aaaacaacttatgaacatatcataagtttttttcata 19389987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 26779996 - 26779905
Alignment:
Q  5 ctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||||||||| | || ||| ||| | |||||||| || ||||||||||||||||| || ||   ||||||| |||||||| |||||||    
T  26779996 ctataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaacttatgtac-ggtcataaggtgttttcagaaattct 26779905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 33108660 - 33108600
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 98  Q
    ||||||||| ||||||||||||||||| ||  |||  ||| |||||||||||||| |||||    
T  33108660 cttatggaaataagttgaaaacaacttatggtcatggcatgagttgttttcataagttctt 33108600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 37811887 - 37811943
Alignment:
Q  41 atggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    |||||| |||||||||||||  || ||||||| ||||||| ||||||||||| ||||    
T  37811887 atggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttct 37811943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 42336657 - 42336701
Alignment:
Q  48 taagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||| ||||||||||| || |||| |||||||||||||||||||    
T  42336657 taagtcgaaaacaacttttggacatgtcataagttgttttcataa 42336701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 51929589 - 51929517
Alignment:
Q  26 tatattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 97  Q
    ||||||||| ||||||||||| ||||||||||| | ||| |||| | | ||||||| ||||||||| ||||||    
T  51929589 tatattggagaacttatggaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcatgaattct 51929517  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 499768 - 499710
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    |||||||| |||| |||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  499768 ttatggaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttct 499710  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 17368675 - 17368767
Alignment:
Q  5 ctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||||||||| | || ||| ||||| |  |||||||| |||| |||||||  | | ||||||| ||||||||||||||||||| ||||    
T  17368675 ctataagttgttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttct 17368767  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 34205236 - 34205327
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaa-cttatggaactaagt-tgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    ||||||||||||||||| | || ||| ||| |||| ||||||||| ||| | |||||||||||| |||||||  |||||||||||| |||||    
T  34205236 agctataagttgttttcataagctatcttgaaaaagcttatggaaataaatgtgaaaacaacttatgaacatgacataagttgtttccataa 34205327  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 37588433 - 37588322
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 102  Q
    ||||||||||||||||| | || |||  |||| | ||||||||| |||| |||||||| ||| | ||||| ||||| ||||| |||||||  ||| | ||    
T  37588433 agctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttattaacatttcataggttgtattcataagctctctcaa 37588334  T
Q  103 atagtctcacaa 114  Q
    | ||||||||||    
T  37588333 acagtctcacaa 37588322  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 39983696 - 39983739
Alignment:
Q  71 atatcataagttgttttcataaattcttttaaatagtctcacaa 114  Q
    ||||||||||||||||||||||||||||| |||| || ||||||    
T  39983696 atatcataagttgttttcataaattctttcaaatggtttcacaa 39983739  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 15402902 - 15402808
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 97  Q
    ||||||||||||||||| | |  ||| || || ||| ||| ||| | || |||||||||||| |||||||||||||| |||||||| ||| ||||    
T  15402902 agctataagttgttttcataacctattttagagaacgtatagaaattagctgaaaacaacttatgaacatatcataatttgttttcgtaagttct 15402808  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 29925839 - 29925933
Alignment:
Q  4 gctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 97  Q
    |||||||||||||| | | || ||||||||| |||||||| || ||||||||||| |||   |||||| | ||||||| ||||||||||| ||||    
T  29925839 gctataagttgtttacataagctatattggagaacttatgaaaataagttgaaaaaaacacatgaacattgtcataagctgttttcataagttct 29925933  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 4619732 - 4619793
Alignment:
Q  31 tggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||| ||||||||||| |||| ||||| || ||| ||||||| |||| ||||||||||||||    
T  4619732 tggagaacttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataa 4619793  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 5531083 - 5531120
Alignment:
Q  55 aaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||||| || ||||||||||||||||||||||||    
T  5531083 aaaacaacttatggacatatcataagttgttttcataa 5531120  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 6593331 - 6593408
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    |||||| || |||| |||||| | ||||| |||| |||| ||| ||||||||||||||||   |||||||||||||||    
T  6593331 cttatgaaaataagctgaaaagagcttgttaacacatcaaaagctgttttcataaattctcccaaatagtctcacaag 6593408  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 15074822 - 15074765
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaaca 60  Q
    ||||||||||||||||| | || |||| |||||| ||||||||| |||| ||||||||    
T  15074822 agctataagttgttttcataagttatactggaaagcttatggaaataagctgaaaaca 15074765  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 2568655 - 2568767
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 102  Q
    ||||||||||||||||| | || |||  |||| | || ||| || |||| | |||| ||||| |||| || ||||||| ||||||||||| ||||| |||    
T  2568655 agctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataagttcttctaa 2568754  T
Q  103 atagtctcacaag 115  Q
    | |||||| ||||    
T  2568755 acagtctctcaag 2568767  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 8089968 - 8090040
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctc 110  Q
    |||||| || |||| |||||||| |||  ||| ||||||||||||||||||||||  ||| | ||||||||||    
T  8089968 cttatgaaaataagctgaaaacagcttaggaatatatcataagttgttttcataagctctctcaaatagtctc 8090040  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 18857435 - 18857359
Alignment:
Q  39 ttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 115  Q
    ||||| || |||||| |||||| ||| ||||||| |||| || ||||||||||||||||| |||  | |||||||||    
T  18857435 ttatgaaattaagttaaaaacagcttatgaacatgtcattagctgttttcataaattcttctaagcattctcacaag 18857359  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 33533612 - 33533536
Alignment:
Q  3 agctataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataa 79  Q
    ||||||||| |||||||   || ||| ||||| | ||||||||| ||||||||||||||||| |||| || ||||||    
T  33533612 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 33533536  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 37611279 - 37611199
Alignment:
Q  12 ttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||| | || ||| ||||| | ||||||||| |||  |||||||| ||| ||||||| ||| |||||||||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataa 37611199  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 37788009 - 37787929
Alignment:
Q  12 ttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||| | || ||| ||||| | ||||||||| |||  |||||||| ||| ||||||| ||| |||||||||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataa 37787929  T

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Target: scaffold0286 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 16110 - 16189
Alignment:
Q  6 tataagttgttttccttagatatattggaaaacttatggaactaagttgaaaacaacttgtgaacatatcataagttgtt 85  Q
    |||||||||||||||| || | | |||||||  |||||||| ||||||||||||||||| || |||| || |||| ||||    
T  16110 tataagttgttttcctaagctgtcttggaaagattatggaaataagttgaaaacaacttatggacatgtcgtaaggtgtt 16189  T

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Target: scaffold0147 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 12742 - 12688
Alignment:
Q  38 cttatggaactaagttgaaaacaacttgtgaacatatcataagttgttttcataa 92  Q
    |||||||| ||||| |||||||||||| || |||| ||||||||||||| |||||    
T  12742 cttatggagctaagctgaaaacaacttatggacatgtcataagttgtttccataa 12688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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