View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18740_low_16 (Length: 235)
Name: NF18740_low_16
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39273002 - 39272783
Alignment:
| Q |
1 |
ctttgtatttcaaggcatgtgcgaggtatatgtgaacacttggctaagatagtaagggaaatgcatggtttagatattgattctgagacggatgtagcta |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39273002 |
ctttgtatttcaaggcatgtgcaaggtatatgtgaacacttggctaagatagtaaaggaaatgcatggtttagatattgactctgagacggatgtagcta |
39272903 |
T |
|
| Q |
101 |
tctgttgtggccaaactgaggcttttgctgctgcaatctttgcaagtatgctctttattgttttattgttttagttcaagctgacacatacaccgtacac |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39272902 |
tctgttgtggtcaaactgaggcttttgctgctgcaatctttgcaagtatgctctttatagttttattgttttagttcaagctgacacatacaccttacac |
39272803 |
T |
|
| Q |
201 |
aatatcgacactgatacatt |
220 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
39272802 |
aataccgacactgatacatt |
39272783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University