View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18740_low_19 (Length: 223)
Name: NF18740_low_19
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_low_19 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 9231956 - 9231755
Alignment:
| Q |
1 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaagg |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9231956 |
ttggcggaatccgctgaaaccatttcatagaagttcgttgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaatatgcggtaagg |
9231857 |
T |
|
| Q |
101 |
tcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9231856 |
tcctgtaattatgattttcttaagtatgttcttactggaattgatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
9231757 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
9231756 |
tg |
9231755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 18350810 - 18351011
Alignment:
| Q |
1 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaagg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18350810 |
ttggcggaatccgctgaaaccatttcatagaagttcgttgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaatatgcggtaagg |
18350909 |
T |
|
| Q |
101 |
tcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18350910 |
tcctgtaattatgattttcttaagtatgttcttactggaattgatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
18351009 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
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|| |
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|
| T |
18351010 |
tg |
18351011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 16902212 - 16902413
Alignment:
| Q |
1 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaagg |
100 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |
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| T |
16902212 |
ttggcggaatctgctgaaaccacctcatagaagttcattgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaataagcggtgagg |
16902311 |
T |
|
| Q |
101 |
tcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| || || ||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||| |
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| T |
16902312 |
tcctgtaattatgatttttttaagtaggttcttcctagaagtgatgattcagaaggggagaaccccgagtatctcaaattatactcacagatgatgtatt |
16902411 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
16902412 |
tg |
16902413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2914016 - 2914217
Alignment:
| Q |
1 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2914016 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaatatgcggtaagg |
2914115 |
T |
|
| Q |
101 |
tcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914116 |
tcctgtaattatgattttcttaagtatgtttttactggaattaatgattcataagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
2914215 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
2914216 |
tg |
2914217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 6488499 - 6488700
Alignment:
| Q |
1 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6488499 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaatatgcggtaagg |
6488598 |
T |
|
| Q |
101 |
tcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6488599 |
tcctgtacttatgattttcttaagtatgttcttactagaattgatgattcagaatggaagaaccatgagtatctcaaattaaagtcacatatgatgtatt |
6488698 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
6488699 |
tg |
6488700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17650229 - 17650028
Alignment:
| Q |
1 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
17650229 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttctaaaagcacatcaacttcgattctttaataatcaatatgcggtaagg |
17650130 |
T |
|
| Q |
101 |
tcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatt |
200 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
17650129 |
tcatgtaactatgattttcttaagtatgttcttactggaattgatgattcagaagggaagaaccatgagtatctcagattaaagtcacagatgatgtatt |
17650030 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
17650029 |
tg |
17650028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 20635723 - 20635581
Alignment:
| Q |
43 |
atcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatg |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
20635723 |
atcctcttttttaaaagcacatcgacttcgattctttaataatcaatatgcggtaaggtcatgtaattatgattttcttaaatatgttcttactgaaatt |
20635624 |
T |
|
| Q |
143 |
gatgattcagaagggaagaaccatgagtatctcaaattaaagt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20635623 |
gatgattcagaagggaagaaccatgagtatctcaaattaaagt |
20635581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1011 - 1096
Alignment:
| Q |
1 |
ttggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatc |
86 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||| ||||||| |
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|
| T |
1011 |
ttggctgaatcccgtgaaaccatttcatagaagttcattgatatcttctttttataaagcaaatcgacttcgattcttgaataatc |
1096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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