View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18740_low_6 (Length: 384)
Name: NF18740_low_6
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 36611288 - 36610921
Alignment:
| Q |
18 |
attttgtttccaaacttcagtttgattgatacaactgtttggtagcaagtcaaaattgattgttaaaatcatgctaaattttagttaacattcaagtgtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
36611288 |
attttgtttccaaacttcagtttgatcgatacaactgtttggtagcaagtcaaaattgattgttaaaattatgttaaattttagttaacattcaagtgtt |
36611189 |
T |
|
| Q |
118 |
tcattgcaagtcaaaattgttttccatccaaacttcagtttgattaagagtaataaaagaagttattgcattgaactaagaaattcgtctaagttttagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36611188 |
tcattgcaagtcaaaattgttttccatccaaagttcagtttgattaagagtaataaaagaagttattgcattgaactaagaaattcgtctaagttttagc |
36611089 |
T |
|
| Q |
218 |
tttcatagtaaaaatattgaaacacaatttatatct--cttc---------aacctcaattttaatcgaatcaatttaattcaaaaccatcaaaatcatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | | | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36611088 |
tttcatagtaaaaatattgaaacacaattttttttttccgtcaaaaaaaaaaacctcaattttaatcgaatcaatttaattcaaaaccatcaaaatcatg |
36610989 |
T |
|
| Q |
307 |
cgtatcattagcttgttctagcacactttcacaatttgttatgttatttttgtgttgtgctctctctg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36610988 |
cgtatcattagcttgttctagcacactttcacaatttgttatgttatttttgtgttgtgctctctctg |
36610921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University