View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18740_low_8 (Length: 351)
Name: NF18740_low_8
Description: NF18740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18740_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 337
Target Start/End: Original strand, 41248997 - 41249328
Alignment:
| Q |
4 |
gcaggatcacagaacaagtccaactgaaacaaaacattataatgttataaagatagatccaactatcatatgtgcagcaccatgcttgttgtggctacct |
103 |
Q |
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| T |
41248997 |
gcaggatcacaaaacaagtccaactgaaacaaaacattataatgttataaagatagatccaactatcatatgtgcagcaccatgcttgttgtggctacct |
41249096 |
T |
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| Q |
104 |
ccaaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaattgtagctatggtttccaatatctttgcttggcttcttcgac |
203 |
Q |
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| T |
41249097 |
ccaaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaattgtagctatggtttccaatatctttgcttggcttcttcgac |
41249196 |
T |
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| Q |
204 |
ttcttatatgtttatctcctcgagcctaagcacaaaaaagatatgacatttttaccgaataattaccannnnnnnnnnnnnnnnaaattagcttatcatt |
303 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41249197 |
ttct--tatgtttatctcctcgagcctaagcacaaaaaagatatgacatttttaccgaataattaccatttttcttttctttttaaattagcttatcatt |
41249294 |
T |
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| Q |
304 |
ttccacaaacagaattaagggcgtgtgcaaaatg |
337 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41249295 |
ttccacaaacagaattaagggcgtgtgcaaaatg |
41249328 |
T |
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