View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18741_high_2 (Length: 412)
Name: NF18741_high_2
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18741_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 33954297 - 33954674
Alignment:
| Q |
20 |
aacgaacaaccacttcaagtatttccccttccaaatttgcctatggattatagatattggttacaccttttttccttaaatatttaactctgtgcattgg |
119 |
Q |
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| T |
33954297 |
aacgaacaaccacttcgagtatttccccttccaaatttgcctatggattatagatattggtgtcaccttttttccttaaatattgaactctgtgcattgg |
33954396 |
T |
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| Q |
120 |
acctatataaaggtgatatcaatttttattccatataaataaatcaaatttcatttttagtccttaaaaaggtgatttttcaacatatacttaaactatt |
219 |
Q |
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| T |
33954397 |
acctata--aaggtgatatcaatttttattgcatataaataaatcaaatttcatttttagtccttaaaaaggtgatttttcaacatatccttaaactatc |
33954494 |
T |
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| Q |
220 |
cttaaatttcatttttattctcgactaaattcaaatttatttaacttatccttaaacttttaaatttttagtcttgaaacgatttttcaacatatcaacc |
319 |
Q |
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| T |
33954495 |
cttaaatttcatttttattcccgactaaattcaaatttatttaacttatccttaaacttttaaatttttggtcttcaaactatttttcaatatatcaacc |
33954594 |
T |
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| Q |
320 |
aattggtcttcagacttgacaaaatatgtggtgatttcatctggaagtaccttgtctattacataatgacatccatctct |
399 |
Q |
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| T |
33954595 |
aattggtcttcagacttgacaaaatatgtggtgatttcatctggaagtaccttgtctattacataatgacatccatctct |
33954674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 33978192 - 33978324
Alignment:
| Q |
17 |
aaaaacgaacaaccacttcaagtatttccccttccaaatttgcctatggattatagatattg--gttacaccttttttccttaaatatttaactctgtgc |
114 |
Q |
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| T |
33978192 |
aaaaacgaacagccacttcaagtatttccccttccaaatttgcctatggataatagatattggtgtgtcaccttttttccttaaatattgaactc--tgc |
33978289 |
T |
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| Q |
115 |
attggacctatataaaggtgatatcaatttttattcc |
151 |
Q |
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| T |
33978290 |
attggacc--cataaaggttatataagtttttattcc |
33978324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 33962869 - 33963001
Alignment:
| Q |
17 |
aaaaacgaacaaccacttcaagtatttccccttccaaatttgcctatggattatagatattg--gttacaccttttttccttaaatatttaactctgtgc |
114 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||| ||||| ||| |
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| T |
33962869 |
aaaaacgaacagccacttcaagtatttccgcttccaaatttgcgtatggataatagatattggtgtgtcaccttttttccttaaatattgaactc--tgc |
33962966 |
T |
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| Q |
115 |
attggacctatataaaggtgatatcaatttttattcc |
151 |
Q |
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| T |
33962967 |
attggacc--cataaaggttatataagtttttattcc |
33963001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 9188217 - 9188167
Alignment:
| Q |
308 |
aacatatcaaccaattggtcttcagacttgacaaaatatgtggtgatttca |
358 |
Q |
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| T |
9188217 |
aacatatcagccaattggtcttcaaacttgacaaaatctgtggtgatttca |
9188167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 3405436 - 3405477
Alignment:
| Q |
142 |
tttttattccatataaataaatcaaatttcatttttagtcct |
183 |
Q |
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| T |
3405436 |
tttttagtccctataaatatatcaaatttcatttttagtcct |
3405477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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