View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18741_low_1 (Length: 584)

Name: NF18741_low_1
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18741_low_1
NF18741_low_1
[»] chr8 (5 HSPs)
chr8 (19-574)||(9230844-9231399)
chr8 (19-68)||(9231410-9231459)
chr8 (19-68)||(9231470-9231519)
chr8 (19-68)||(9231530-9231579)
chr8 (19-68)||(9231590-9231639)
[»] chr4 (4 HSPs)
chr4 (19-574)||(18351189-18351744)
chr4 (19-394)||(16902529-16902904)
chr4 (19-68)||(16902469-16902518)
chr4 (19-68)||(18351129-18351178)
[»] chr5 (4 HSPs)
chr5 (110-574)||(2914706-2915168)
chr5 (50-420)||(40808034-40808404)
chr5 (56-110)||(2914369-2914423)
chr5 (469-509)||(21584860-21584900)
[»] chr6 (1 HSPs)
chr6 (91-574)||(7999283-7999766)
[»] chr2 (5 HSPs)
chr2 (194-417)||(30242150-30242372)
chr2 (19-125)||(18492777-18492883)
chr2 (19-82)||(6488816-6488879)
chr2 (19-68)||(6488756-6488805)
chr2 (19-68)||(18492894-18492943)
[»] scaffold0689 (2 HSPs)
scaffold0689 (194-574)||(1761-2156)
scaffold0689 (88-157)||(1658-1727)
[»] chr7 (1 HSPs)
chr7 (248-301)||(10627065-10627118)
[»] chr3 (2 HSPs)
chr3 (265-332)||(2612073-2612139)
chr3 (19-68)||(20635463-20635512)


Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Complemental strand, 9231399 - 9230844
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaatgctttgaaaaaggaccactgtatagaaactatcaaagaaatagtgtttt 118  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  9231399 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaatgctttgaaaaagggccgatgtatagaaactatcaaagaaatagtgtttt 9231300  T
Q  119 ttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatgaatgtctaaatttaatatttttagatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  9231299 ttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttacttacccggacaggacatgaatatctaaatttaatatttttagatact 9231200  T
Q  219 tttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcggg 318  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9231199 tttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcggg 9231100  T
Q  319 aaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatga 418  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9231099 aaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaaaatga 9231000  T
Q  419 gtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatcttgtctttgtt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9230999 gtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttgtctttgtt 9230900  T
Q  519 tctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9230899 tctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 9230844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 9231459 - 9231410
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  9231459 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 9231519 - 9231470
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  9231519 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 9231579 - 9231530
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  9231579 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 9231639 - 9231590
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  9231639 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Original strand, 18351189 - 18351744
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaatgctttgaaaaaggaccactgtatagaaactatcaaagaaatagtgtttt 118  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  18351189 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaatgctttgaaaaagggccgatgtatagaaactatcaaagaaatagtgtttt 18351288  T
Q  119 ttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatgaatgtctaaatttaatatttttagatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  18351289 ttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttacttacccggacaggacatgaatatctaaatttaatatttttagatact 18351388  T
Q  219 tttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcggg 318  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18351389 tttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcggg 18351488  T
Q  319 aaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatga 418  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18351489 aaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaaaatga 18351588  T
Q  419 gtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatcttgtctttgtt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18351589 gtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttgtctttgtt 18351688  T
Q  519 tctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18351689 tctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 18351744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 16902529 - 16902904
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaatgctttgaaaaaggaccactgtatagaaactatcaaagaaatagtgtttt 118  Q
    |||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  16902529 aatatttacgatccaaaaagagaaaaaaacacagtccttgtttaacaaaatgctttgaaaaagggccgatgtatagaaactatcaaagaaatagtgtttt 16902628  T
Q  119 ttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatgaatgtctaaatttaatatttttagatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  16902629 ttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttacttacccggacaggacatgaatatctaaatttaatatttttagatact 16902728  T
Q  219 tttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcggg 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16902729 tttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcggg 16902828  T
Q  319 aaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgt 394  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16902829 aaaaattgtgtctttcaccacggaatcctataagtgagatttcgtgtaagtgtcgacacaattttcttgtgcacgt 16902904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 16902469 - 16902518
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  16902469 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 16902518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 18351129 - 18351178
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  18351129 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 18351178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 110 - 574
Target Start/End: Original strand, 2914706 - 2915168
Alignment:
Q  110 tagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatgaatgtctaaatttaatattt 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||     
T  2914706 tagtgttttttcaactctctcaaaattgaagcaatttcaaccatatataatacaattgttacttacccggacaagacatgaatatctaaatttaatattg 2914805  T
Q  210 ttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaa 309  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2914806 ttagatacttttttagacctattggcaatactacgtgggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaa 2914905  T
Q  310 ttcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttt 409  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2914906 ttcttcggaaaaaattgtgtctttcaccacggaatcctataagtgagattttgagtaagtgtctacacaattttcttgtgcacgtgtgcgaagatatttt 2915005  T
Q  410 agaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatctt 509  Q
     ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  2915006 ggaaaatgagtcacca-tgataccaacccatctgagggagttcttcgttttaatccttatccttcttcttgttatcggatatctcgttcag-cacatctt 2915103  T
Q  510 gtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 574  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2915104 ttctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 2915168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 50 - 420
Target Start/End: Original strand, 40808034 - 40808404
Alignment:
Q  50 cagtccttgtttaacaaaatgctttgaaaaaggaccactgtatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaa 149  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40808034 cagtccttgtttaacaaaatgctttgaaaaagggccgatgtatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaa 40808133  T
Q  150 ccatatataatacaattgttatttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtagga 249  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  40808134 ccatatataatacaattgttacttatccggacaggacatgaatatctaaatttaatatttttagatactcttttagacctattggcgatactacgtagga 40808233  T
Q  250 gtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctat 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40808234 gtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctac 40808333  T
Q  350 aagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatgagt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40808334 aagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaaaatgagt 40808404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 2914369 - 2914423
Alignment:
Q  56 ttgtttaacaaaatgctttgaaaaaggaccactgtatagaaactatcaaagaaat 110  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  2914369 ttgtttaacaaaatgctttgaaaaagggccgatgtatagaaactatcaaagaaat 2914423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 21584860 - 21584900
Alignment:
Q  469 tccttcttcttgttaccggatatctcgttcagacacatctt 509  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  21584860 tccttcttcttgttactggatatctcgttcatacatatctt 21584900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 91 - 574
Target Start/End: Complemental strand, 7999766 - 7999283
Alignment:
Q  91 atagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatga 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |    
T  7999766 atagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagtaatttcaaccatatataatacaattgttacttacccggacaggacataa 7999667  T
Q  191 atgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatatt 290  Q
    || ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7999666 atatctaaatttaatatttttagatacttttttagacctattgacgatactacgtaggagtcctaaatttcaacaatttgtgtccatttttcatgatatt 7999567  T
Q  291 agggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgc 390  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||| |||||||||| ||    
T  7999566 agagatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacagaatcctataagtgagattttgagtaagtgtttacataattttcttgagc 7999467  T
Q  391 acgtgtgcgaagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggata 490  Q
    | |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7999466 atgtgtgcgaagatattttgaaaaatgagtcaccattgatatctacccatctgagggagttcttcgttttagtccttatccttcttcttgttaccggata 7999367  T
Q  491 tctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 574  Q
    ||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7999366 tctcgtttagacaaatcttttctttgtttcttgattctctaatgagttacagaaagagttcgaagaagtcaaatctttgatgat 7999283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 194 - 417
Target Start/End: Original strand, 30242150 - 30242372
Alignment:
Q  194 tctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagg 293  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  30242150 tctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaattttaacaatttgtatc-atttttcatgatattagg 30242248  T
Q  294 gatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacg 393  Q
    |||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242249 gatgaatccaagcgaattctttggaaaaaattgtgtctttcactacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacg 30242348  T
Q  394 tgtgcgaagatattttagaaaatg 417  Q
    |||||||| ||||||| |||||||    
T  30242349 tgtgcgaatatattttggaaaatg 30242372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 18492883 - 18492777
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaatgctttgaaaaaggaccactgtatagaaactatcaaagaaatagtgtttt 118  Q
    ||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  18492883 aatatttacgatccgaaaagagaaaaaaacacggtccttgtttaacaaaatgctttgaaaaagggccgatgtatagaaactatcaaagaaatagtgtttt 18492784  T
Q  119 ttcaact 125  Q
    |||||||    
T  18492783 ttcaact 18492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 6488816 - 6488879
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaatgctttgaaaaagg 82  Q
    ||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||    
T  6488816 aatatttacgatccgaaaagagaaaaaaacatagtccttgtttaacaaaatgctttgaaaaagg 6488879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 6488756 - 6488805
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  6488756 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 6488805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 18492943 - 18492894
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  18492943 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 18492894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0689 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 194 - 574
Target Start/End: Original strand, 1761 - 2156
Alignment:
Q  194 tctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagg 293  Q
    ||||||||| ||||||||||||||||||| ||||||||||  ||||||| |||| ||||         || ||||||||||||||||||||||||||| |    
T  1761 tctaaatttgatatttttagatactttttcagacctattgccgatactaagtagcagtc---------aaaaatttgtatccatttttcatgatattatg 1851  T
Q  294 gatggatccaa---------gcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttc 384  Q
     |||||||  |         ||||||||||| | |||||||||||||| ||| | ||||||  ||||||||||||||||||||||||  ||| |||||||    
T  1852 catggatcagatatatcatggcgaattcttcagaaaaaattgtgtcttccacaatggaatctgataagtgagatttcgagtaagtgtttacataattttc 1951  T
Q  385 ttgtgcacgtgtgcgaagatat--ttta--gaaa--atgagtcaccattgatatcgacccatctgag---------------ggagttcttcgttttaat 463  Q
    || ||      | |||||| ||  || |  ||||  |||||||||||||||||||||| ||||||||               ||||||| ||  || |||    
T  1952 ttctg------tccgaagaaatgattcatcgaaataatgagtcaccattgatatcgacacatctgagatcgccaaatgttcaggagttcctctattcaat 2045  T
Q  464 ccttatccttcttcttgttaccggatatctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaa 563  Q
    |||| |||||||||||||| | |||||||||||||  ||||||||| |||||||||| |||  || || |||||||||||||||||||||| | ||||||    
T  2046 ccttttccttcttcttgttgctggatatctcgttcgtacacatcttctctttgtttcccgagcctatagtgagttacagacagagttcgaaaaggtcaaa 2145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0689; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 1658 - 1727
Alignment:
Q  88 tgtatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatat 157  Q
    ||||||||| || |||| || |||||| |||||||||||||||||||  ||| | ||||||| |||||||    
T  1658 tgtatagaacctttcaacgagatagtgctttttcaactctctcaaaacggaatctattccaaacatatat 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 10627118 - 10627065
Alignment:
Q  248 gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10627118 gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc 10627065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 2612139 - 2612073
Alignment:
Q  265 aatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctt 332  Q
    ||||||| |||||||||||||||||||||| ||||||| | |||||||||||  ||| ||||||||||    
T  2612139 aatttgtttccatttttcatgatattaggg-tggatccgaacgaattcttcgaaaaatattgtgtctt 2612073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 20635512 - 20635463
Alignment:
Q  19 aatatttacgatccgaaaagagnnnnnnncacagtccttgtttaacaaaa 68  Q
    ||||||||||||||||||||||       |||||||||||||||||||||    
T  20635512 aatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 20635463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University