View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18741_low_12 (Length: 249)
Name: NF18741_low_12
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18741_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40120267 - 40120037
Alignment:
| Q |
1 |
tgagtctcatcaaatagggagtaccgtgagattatataaatcttattgaccacactcgcacatcattcaacatttatgactgaatatagattagatgaag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40120267 |
tgagtctcatcaaatagggagtaccctgagattatataaatcttattgaccacactcgcacatcattcaacatttatgactgaata-------gatgaag |
40120175 |
T |
|
| Q |
101 |
taagacatctagggaaagcttcaaacatcattcaattatagattatatacaccaagaaatcaattaacaagtagcatatataaagtaaaaattaaaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40120174 |
taagacatctagggaaagcttcaaacatcattcaattatagattatatacaccaagaaatcaattaacaagtagcatatataaagtaaaaattaaaaaca |
40120075 |
T |
|
| Q |
201 |
actagtaatgaacttgactattttattctcattatatt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40120074 |
actagtaatgaacttgactattttattctcattatatt |
40120037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 40124840 - 40124725
Alignment:
| Q |
114 |
gaaagcttcaaacatcattcaattatagattatataca-ccaagaaatcaatta--acaagtagcatatataaagtaaaaattaaaaacaactagtaatg |
210 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||| || |||||| | | |||| ||||||| ||||| ||||||| |
|
|
| T |
40124840 |
gaaagctacaaacatcattcaattgtagcttatatacacccaagaaatcaattattaccagtagc----agagagtagaaattaagaacaa--agtaatg |
40124747 |
T |
|
| Q |
211 |
aacttgactattttattctcat |
232 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40124746 |
aacttgactattttattctcat |
40124725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University