View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18741_low_13 (Length: 241)
Name: NF18741_low_13
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18741_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 40120629 - 40120393
Alignment:
| Q |
6 |
agacacatgaccatgtcaaagttctttattttgacaaatttttgtatcggtttaataataactaaaaaacaacttatttccagttacttgttaggaagca |
105 |
Q |
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| T |
40120629 |
agacacatgaccatgtcaaagttctttattttgacaaatttttgtatcggtttaataataactaaaaaacaacttatttccagttacttgttaggaagca |
40120530 |
T |
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| Q |
106 |
aaacaaggagttttaacttttaaggaggg-nnnnnnnnttgcatgttagtatgtaatgaatatacacccccaaaatttcatttctttggttagttacgtc |
204 |
Q |
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| T |
40120529 |
aaacaaggagttttaacttttaaggagggaaaaaaaaattgcatgttagtatgtaatgaatatacacccccaaaatttcatttctttggttagttacgtc |
40120430 |
T |
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| Q |
205 |
tgaaaaaagttattgcacaatttaaagtttctgttct |
241 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
40120429 |
tgaaaaaagttattgcacaaattaaagtttctgttct |
40120393 |
T |
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