View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18741_low_14 (Length: 235)
Name: NF18741_low_14
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18741_low_14 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 20012001 - 20011763
Alignment:
| Q |
1 |
atgcatatagtgttgttacttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttactttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20012001 |
atgcatatagtgttgttacttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttactttgtt |
20011902 |
T |
|
| Q |
101 |
aacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgttt----ttctggttgatgtttgtgtcttg |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20011901 |
aacaacagaaagatctagagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttgatgtttgtgtcttg |
20011802 |
T |
|
| Q |
197 |
ttagagattattacctcaaactctctcattcttcaggtt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20011801 |
ttagagattattacctcaaactctctcattcttcaggtt |
20011763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 2467061 - 2466946
Alignment:
| Q |
88 |
ttcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgttt----ttctggttga |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2467061 |
ttcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttga |
2466962 |
T |
|
| Q |
184 |
tgtttgtgtcttgtta |
199 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2466961 |
tgtttgtgtcttgtta |
2466946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 43692815 - 43692743
Alignment:
| Q |
89 |
tcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggtta |
161 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| ||| || ||| ||| |||| || ||||||||| ||||| |
|
|
| T |
43692815 |
tcttactttgttaacaatagaaagctctaaagaaaattcaacggccagatatagctactactttcattggtta |
43692743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 25548541 - 25548769
Alignment:
| Q |
7 |
atagtgttgttacttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttactttgttaacaac |
106 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25548541 |
atagtgttgttacttttggagtagtttgtttttggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttactttgttaacaac |
25548640 |
T |
|
| Q |
107 |
agaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttctggttgatgtttgtgtcttgttagagatta |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25548641 |
aaaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttctggttgatgtttgtgtcttgttagagatta |
25548740 |
T |
|
| Q |
207 |
ttacctcaaactctctcattcttcaggtt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25548741 |
ttacctcaaactctctcattcttcaggtt |
25548769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 22622116 - 22621878
Alignment:
| Q |
1 |
atgcatatagtgttgttacttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttactttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22622116 |
atgcatatagtgttgttacttttggagtagatttttattggaggcagaatgcttcagccggaacctaccttattatgttgttatgttttcttactttgtt |
22622017 |
T |
|
| Q |
101 |
aacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgttt----ttctggttgatgtttgtgtcttg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22622016 |
aacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttgatgtttgtgtcttg |
22621917 |
T |
|
| Q |
197 |
ttagagattattacctcaaactctctcattcttcaggtt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621916 |
ttagagattattacctcaaactctctcattcttcaggtt |
22621878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34335366 - 34335278
Alignment:
| Q |
1 |
atgcatatagtgttgttacttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgtttt |
89 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34335366 |
atgcatatagttttgttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatgtttt |
34335278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 15157593 - 15157423
Alignment:
| Q |
1 |
atgcatatagtgttgttacttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgttttcttactttgtt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15157593 |
atgcatatagtgttgttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatgttttcttactttgtt |
15157494 |
T |
|
| Q |
101 |
aacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgt |
171 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15157493 |
aacaacagaaagatctaaagttaatacagcggcaagagatagttattactttcatcggttactccatttgt |
15157423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 15157391 - 15157354
Alignment:
| Q |
198 |
tagagattattacctcaaactctctcattcttcaggtt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15157391 |
tagagattattacctcaaactctctcattcttcaggtt |
15157354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8998943 - 8999031
Alignment:
| Q |
1 |
atgcatatagtgttgttacttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccttattatgttgttatgtttt |
89 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8998943 |
atgcatatagttttgttgcttttggagtagttttttattggaggcagaatgcttcagccgaaacctaccatattatgttgttatgtttt |
8999031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University