View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18741_low_15 (Length: 227)
Name: NF18741_low_15
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18741_low_15 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 25549049 - 25548828
Alignment:
| Q |
6 |
ataattaccatttacaaatctaaatttaaaacacatagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25549049 |
ataattaccatttacaaatctaaatttaaaacacatagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatca |
25548950 |
T |
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| Q |
106 |
taacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacacattatctatcata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25548949 |
taacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacacattatctatcata |
25548850 |
T |
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| Q |
206 |
taaagacaagtcacaattacaa |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
25548849 |
taaagacaagtcacaattacaa |
25548828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 22621598 - 22621819
Alignment:
| Q |
6 |
ataattaccatttacaaatctaaatttaaaacacatagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621598 |
ataattaccatttacaaatctaaatttaaaacacatagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatca |
22621697 |
T |
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| Q |
106 |
taacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacacattatctatcata |
205 |
Q |
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| T |
22621698 |
taacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacacattatctatcata |
22621797 |
T |
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| Q |
206 |
taaagacaagtcacaattacaa |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
22621798 |
taaagacaagtcacaattacaa |
22621819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 20011483 - 20011704
Alignment:
| Q |
6 |
ataattaccatttacaaatctaaatttaaaacacatagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatca |
105 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20011483 |
ataattaccatttacaaatctaaatttaaaatacatagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatca |
20011582 |
T |
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| Q |
106 |
taacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacacattatctatcata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20011583 |
taacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacacattatctatcata |
20011682 |
T |
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| Q |
206 |
taaagacaagtcacaattacaa |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
20011683 |
taaagacaagtcacaattacaa |
20011704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 1961233 - 1961385
Alignment:
| Q |
39 |
catagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961233 |
catagaagtttactagtgctgcctttgcagccttacattacatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
1961332 |
T |
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| Q |
139 |
taaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacaca |
193 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
1961333 |
taaacaccttgcttagtttgaagaaact--aagcaacattcattaataaaacaca |
1961385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 15157253 - 15157292
Alignment:
| Q |
185 |
taaaacacattatctatcatataaagacaagtcacaatta |
224 |
Q |
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| T |
15157253 |
taaaacacattatctgtcatataaagacaagtcacaatta |
15157292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 15157229 - 15157262
Alignment:
| Q |
8 |
aattaccatttacaaatctaaatttaaaacacat |
41 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
15157229 |
aattaccatttacaaatctaaatttaaaacacat |
15157262 |
T |
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