View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18741_low_3 (Length: 401)

Name: NF18741_low_3
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18741_low_3
NF18741_low_3
[»] chr2 (15 HSPs)
chr2 (17-357)||(9079808-9080152)
chr2 (20-181)||(10474111-10474274)
chr2 (20-181)||(10545099-10545258)
chr2 (39-230)||(10518493-10518679)
chr2 (26-230)||(10507306-10507505)
chr2 (38-179)||(10848757-10848897)
chr2 (59-181)||(10463575-10463695)
chr2 (27-181)||(7476521-7476671)
chr2 (38-177)||(28105303-28105442)
chr2 (27-181)||(10492728-10492876)
chr2 (38-148)||(10860661-10860774)
chr2 (38-177)||(27967281-27967420)
chr2 (37-181)||(7478686-7478826)
chr2 (129-181)||(10507523-10507573)
chr2 (141-181)||(10488770-10488810)
[»] chr5 (2 HSPs)
chr5 (83-230)||(33602569-33602711)
chr5 (20-181)||(33575337-33575495)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 9080152 - 9079808
Alignment:
Q  17 agatcaagtccataaaacaaagaatt----caaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgcta 112  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9080152 agatcaagtccataaaacaaagaattaattcaaggtaattcaacaattaccttatatttgtaagcacttcccatgaatactggtataaacttctccgcta 9080053  T
Q  113 tggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9080052 tggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagt 9079953  T
Q  213 aacaactagttttcatatcagaaaatgcatctgccttcataggtgcatggacaaaaaatggatttcctcaaggatcaaaccctaaaatgtaaaacaagaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079952 aacaactagttttcatatcagaaaatgcatctgccttcataggtgcatggacaaaaaatggatttcctcaaggatcaaaccctaaaatgtaaaacaagaa 9079853  T
Q  313 taaaacatatttgaatttgttctccaacttcatctcaagacctga 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  9079852 taaaacatatttgaatttgttctccaacttcatctcaaaacctga 9079808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 10474111 - 10474274
Alignment:
Q  20 tcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggc 119  Q
    ||||| ||||| ||||||||||||||| ||||| |||| |||||||||| ||| |||||||  ||||||||| |||||||||||||   |||||||||||    
T  10474111 tcaagaccatacaacaaagaattcaagttaatttaacacttaccttatacttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggc 10474210  T
Q  120 cctacgaactgcttcct--acacacacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  10474211 cctacgaactgcttcctacacacacacacaataataacaaaaagaaaactgtttacaagataag 10474274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 10545099 - 10545258
Alignment:
Q  20 tcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggc 119  Q
    ||||| ||||| ||||||||||||||||||||| |||| ||||||||||| || |||||||  ||||||| | ||||||||| |||   |||||||||||    
T  10545099 tcaagaccatacaacaaagaattcaaggtaatttaacagttaccttatatctgaaagcactgcccatgaaaaatggtataaatttccgtgctatggtggc 10545198  T
Q  120 cctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    ||  ||||| |||||||||| ||||  |||||||||||||| |||||||||||||| |||||    
T  10545199 ccggcgaacagcttcctacaaacac--aataataacaaaaataaaactatttacaagataag 10545258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 230
Target Start/End: Original strand, 10518493 - 10518679
Alignment:
Q  39 aattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcctac 138  Q
    ||||||||| ||||||||  |||||||||||||| | |||||  ||||||  | ||||||||| |||   ||||||||||||| ||||||||||||||||    
T  10518493 aattcaaggcaattcaacggttaccttatatttgaatgcactgcccatgagaaatggtataaatttccgtgctatggtggcccgacgaactgcttcctac 10518592  T
Q  139 acacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagtaacaactagttttcatat 230  Q
    ||||||  |||||||||||||||||||  ||||||||||||| | |||| | | |||  ||||| ||| |||||||||||| ||||||||||    
T  10518593 acacac--aataataacaaaaagaaaataatttacaaaataa-gatttgaaaatggg--gggtgggggcgaagtaacaactggttttcatat 10518679  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 10507306 - 10507505
Alignment:
Q  26 ccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacg 125  Q
    ||||| |||| ||||||||||| ||||||||   |||||| |||||| |||||||  |||||||||| |||||||| |||   |||||||||| || |||    
T  10507306 ccatacaacagagaattcaaggcaattcaacgggtaccttgtatttgaaagcactgcccatgaatacgggtataaatttccgtgctatggtggtccgacg 10507405  T
Q  126 aactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataaggttttggagagggggtgggtgagggagaagtaacaactagtttt 225  Q
    |||||||||||||||||||  ||||||||||| |||||||  | ||||||| ||| | |||| | | |||  ||||| |||||||||||||||| |||||    
T  10507406 aactgcttcctacacacac--aataataacaacaagaaaataacttacaaattaa-gatttgaaaatggg--gggtgggggagaagtaacaactggtttt 10507500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 10848757 - 10848897
Alignment:
Q  38 gaattcaaggtaattcaacaattaccttat---atttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 134  Q
    ||||||||||| |||||||  |||||||||   ||||| |||||    ||||||||||||||||||| || |  ||||||||||||||||||||||||||    
T  10848757 gaattcaaggtgattcaacgtttaccttattatatttgaaagcatcacccatgaatactggtataaatttgtgtgctatggtggccctacgaactgcttc 10848856  T
Q  135 ctacacacacaaaataataacaaaaagaaaactatttacaaaata 179  Q
    ||||||||    ||||||||||||||||||| ||||| |||||||    
T  10848857 ctacacac----aataataacaaaaagaaaattattttcaaaata 10848897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 10463575 - 10463695
Alignment:
Q  59 ttaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaa 158  Q
    |||||||||||||| |||||||  ||||||| | ||||||||| |||   ||||| ||||| ||||||| ||||||||||| ||||  ||||||||||||    
T  10463575 ttaccttatatttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgcttcctacaaacac--aataataacaaa 10463672  T
Q  159 aagaaaactatttacaaaataag 181  Q
    ||||||| |||||||||||||||    
T  10463673 aagaaaattatttacaaaataag 10463695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 7476671 - 7476521
Alignment:
Q  27 cataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacga 126  Q
    |||| |||||||||||||||| ||||||||  |||||||||| ||| | |||||  ||||||| || |||| ||| ||||  ||||| || |||||| ||    
T  7476671 catataacaaagaattcaaggaaattcaacggttaccttatacttgaatgcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatga 7476572  T
Q  127 actgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    | ||||||||||||||    |||||||||||||||||||||| | ||||||||||    
T  7476571 attgcttcctacacac----aataataacaaaaagaaaactagtgacaaaataag 7476521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 28105442 - 28105303
Alignment:
Q  38 gaattcaaggtaattcaacaattaccttat---atttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 134  Q
    ||||||||||||||||||| ||||||||||   ||| | ||||| |  |||||||||||||||||||||||   ||||||||||||||||||||||| |     
T  28105442 gaattcaaggtaattcaactattaccttattatattggaaagcattacccatgaatactggtataaacttccgtgctatggtggccctacgaactgcgtt 28105343  T
Q  135 ctacacacacaaaataataacaaaaagaaaactatttacaaaa 177  Q
    ||  ||||||||||||||| ||| || ||||||||||| ||||    
T  28105342 ct--acacacaaaataatagcaataa-aaaactatttaaaaaa 28105303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 10492728 - 10492876
Alignment:
Q  27 cataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacga 126  Q
    |||| |||||||||||||||| ||||||||  |||||||||| ||| | |||||  ||||||| || |||| ||| || |  |||||||| |||||||||    
T  10492728 catataacaaagaattcaaggcaattcaacggttaccttatacttgaatgcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacga 10492827  T
Q  127 actgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    | ||||||||||||      || ||||||||||||||||||| |||| |||||||    
T  10492828 attgcttcctacac------aacaataacaaaaagaaaactagttaccaaataag 10492876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 10860661 - 10860774
Alignment:
Q  38 gaattcaaggtaattcaacaattaccttatatttgtaagca---cttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 134  Q
    ||||||||||||||||||   |||||||||||||| |||||   |   ||||||||||||||||||| |||   ||||||||| ||||||||||||||||    
T  10860661 gaattcaaggtaattcaatggttaccttatatttgaaagcatagccacccatgaatactggtataaatttccgtgctatggtgaccctacgaactgcttc 10860760  T
Q  135 ctacacacacaaaa 148  Q
    ||||||| ||||||    
T  10860761 ctacacagacaaaa 10860774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 27967281 - 27967420
Alignment:
Q  38 gaattcaaggtaattcaacaattaccttat---atttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttc 134  Q
    ||||||||||||||||||| ||||||||||   ||| | ||| | |  |||||||| ||||||||||||| |  ||||||||||||||||||||||| |     
T  27967281 gaattcaaggtaattcaactattaccttattatattggaaagaattacccatgaatgctggtataaacttgtgtgctatggtggccctacgaactgcgtt 27967380  T
Q  135 ctacacacacaaaataataacaaaaagaaaactatttacaaaa 177  Q
    ||  ||||||||||||||| ||| || ||||||||||| ||||    
T  27967381 ct--acacacaaaataatagcaataa-aaaactatttaaaaaa 27967420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 7478826 - 7478686
Alignment:
Q  37 agaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcct 136  Q
    ||||||||||| |  |||||  ||||||||| || | |||||||  ||||||| || |||||||| ||    ||| |||| |||||| ||||||||||||    
T  7478826 agaattcaaggcagatcaacggttaccttattttcggaagcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgcttcct 7478727  T
Q  137 acacacacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    |||||||    ||||||||||||||||||||| ||||||||||||    
T  7478726 acacaca----ataataacaaaaagaaaactagttacaaaataag 7478686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 10507523 - 10507573
Alignment:
Q  129 tgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    ||||||||||||| ||||  |||||||||||||||| |||| |||||||||||    
T  10507523 tgcttcctacacatacaa--taataacaaaaagaaacctatatacaaaataag 10507573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 10488770 - 10488810
Alignment:
Q  141 acacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    ||||| |||||||||| ||||||||||| ||||||||||||    
T  10488770 acacacaataataacagaaagaaaactagttacaaaataag 10488810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 33602569 - 33602711
Alignment:
Q  83 ccatgaatactggtataaacttctccgctatggtggccctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataagg 182  Q
    ||||||||| |||||||||||||   |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||| |||| |    
T  33602569 ccatgaataatggtataaacttccgtgctatggtggccctacaaactgcttcctacacacac--aataataacaaaaagaaaactatttacaagataa-g 33602665  T
Q  183 ttttggagagggggtgggtgagggagaagtaacaactagttttcatat 230  Q
     |||| |||   || ||||| ||| |||||||||||| ||||||||||    
T  33602666 atttgtaga--tggcgggtgggggcgaagtaacaactggttttcatat 33602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 33575495 - 33575337
Alignment:
Q  20 tcaagtccataaaacaaagaattcaaggtaattcaacaattaccttatatttgtaagcacttaccatgaatactggtataaacttctccgctatggtggc 119  Q
    ||||| ||||||||||  ||||||||| ||||| |||  ||||||||||||||  ||||||  ||||||||| |||||||||| ||   || ||| ||||    
T  33575495 tcaagaccataaaacatggaattcaagttaatttaacgcttaccttatatttgagagcactgcccatgaataatggtataaacctccgtgcaatgatggc 33575396  T
Q  120 cctacgaactgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 181  Q
    |||| ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||    
T  33575395 cctatgaactgcttcctacacacac--aataataac-aaaagaaaactatttacaagataag 33575337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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