View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18741_low_4 (Length: 366)
Name: NF18741_low_4
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18741_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 36003333 - 36003536
Alignment:
| Q |
19 |
aaaacttagcctcatgttcacttcaataaagaaaaaaggttttgagattgggactgtgaagtgtagaagtagaagggatagtttggtgtttgtaccaaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36003333 |
aaaacttagcctcatgttcacttcaataa-gaaaaaaggttttgagattgggactgtgaagtgtagaagtagaagggatagtttggtgtttgtaccaaca |
36003431 |
T |
|
| Q |
119 |
gaaagctatatataaaagtagaggaaagatattttgacattcaattttaaataattttgggtgacaacnnnnnnnctccattcttattggacaataataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||| || |
|
|
| T |
36003432 |
gaaagctatatataaaagtagaggaatgatattttgacatttaatttcaaataattttgggtgacaactttttttctccattcttattgaacaataacaa |
36003531 |
T |
|
| Q |
219 |
tagaa |
223 |
Q |
| |
|
||||| |
|
|
| T |
36003532 |
tagaa |
36003536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 350
Target Start/End: Original strand, 36003564 - 36003672
Alignment:
| Q |
240 |
gtacgataagaatataatagagagagttattaccaaaattattaaaaat-attgtcaaaatatcattcctcgtaaaagtacatacatgcaagcaagcaaa |
338 |
Q |
| |
|
||||||| ||||||| ||||||| |||| | ||||||||| |||||||| |||||||||||||||||| || || | ||||||||||||||||||||| |
|
|
| T |
36003564 |
gtacgatgagaatatgatagagaaagttgtcaccaaaattgttaaaaatgattgtcaaaatatcattcttcata---gcacatacatgcaagcaagcaaa |
36003660 |
T |
|
| Q |
339 |
atggtctctgct |
350 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
36003661 |
atggtcactgct |
36003672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 35414462 - 35414547
Alignment:
| Q |
137 |
tagaggaaagatattttgacattcaattttaaataattttgggtgacaacnnnnnnnctccattcttattggacaataataataga |
222 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||| ||||| ||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
35414462 |
tagaggaatgatattttgacatccaattttaaataactttggatgacaacttttttcctctattcttattggacaataacaataga |
35414547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 36023258 - 36023219
Alignment:
| Q |
146 |
gatattttgacattcaattttaaataattttgggtgacaa |
185 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36023258 |
gatattttgacaatcaattttaaataattttgggtgacaa |
36023219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 10309769 - 10309812
Alignment:
| Q |
139 |
gaggaaagatattttgacattcaattttaaataattttgggtga |
182 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
10309769 |
gaggaatgatattttgacaatcaattttaaacaattttgggtga |
10309812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 17117046 - 17117121
Alignment:
| Q |
139 |
gaggaaagatattttgacattcaattttaaataattttgggtgacaacnnnnnnnctccattcttattggacaata |
214 |
Q |
| |
|
|||||| |||||||||||| |||||||| | |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
17117046 |
gaggaatgatattttgacaaccaattttagacaattttgggtgacaacctttttcctccattcttactggacaata |
17117121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 50886577 - 50886502
Alignment:
| Q |
139 |
gaggaaagatattttgacattcaattttaaataattttgggtgacaacnnnnnnnctccattcttattggacaata |
214 |
Q |
| |
|
|||||| |||||||||||| |||||||| | || ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50886577 |
gaggaatgatattttgacaaccaattttagacaactttgggtgacaacctttttcctccattcttattggacaata |
50886502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 44995955 - 44995881
Alignment:
| Q |
146 |
gatattttgacattcaattttaaataattttgggtgacaacnnnnnnnctccattcttattggacaataataata |
220 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||||| |||| |||| |||||||||||| |||| |
|
|
| T |
44995955 |
gatattttgacaatcaattttaaatgattttgggtaacaacatttttcctcccttctaattggacaataacaata |
44995881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University