View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18741_low_5 (Length: 364)
Name: NF18741_low_5
Description: NF18741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18741_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 30966774 - 30966438
Alignment:
| Q |
16 |
attgactcataataagataaaaatagaggaaatacaatacaattaatttgacccctaataagataaaaatagagaataggaaaacttatcgattattgac |
115 |
Q |
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| T |
30966774 |
attgactcataataagataaaaatagaggaaatacaatacaaataatttgacccctaataagataaaaatagagaataggaaaacttatcgattattgac |
30966675 |
T |
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| Q |
116 |
tgaggcgtgcgattcatcgagtattttgccatcataacaatcactacaacacaataatcactttttattagcagcgcatgtgaattcacaaggtctcata |
215 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||| | |
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| T |
30966674 |
tgagacgtgcgattcattgagtattttgccatcacaacaatcactacaacacaacaatcactttttgttagcggcgcatgtgaattcgcaaggtctcaga |
30966575 |
T |
|
| Q |
216 |
aacaacttcacaatatcgcagttttttagatgcggaagaaacttaatattaattttatcaattgagtttgtt---agaaggaaaattagacatagcttat |
312 |
Q |
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||||||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
30966574 |
aacaacttcacaagatcgcaactttttagatgtcgatgaaacttaatattaattttatcaattgagtttattataagaaggaaaattagacatagcttgt |
30966475 |
T |
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| Q |
313 |
atactatgctcctgccatattaatctataccaatgtt |
349 |
Q |
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| T |
30966474 |
atactatgcttctcccatattaatctacaccaatgtt |
30966438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 54573036 - 54572994
Alignment:
| Q |
83 |
aatagagaataggaaaacttatcgattattgactgaggcgtgc |
125 |
Q |
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| T |
54573036 |
aatagagaataagtaaacttatcgattattgactgaggcgtgc |
54572994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 14802960 - 14802921
Alignment:
| Q |
82 |
aaatagagaataggaaaacttatcgattattgactgaggc |
121 |
Q |
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| T |
14802960 |
aaatagagaatagaaaaacttatcgattattggctgaggc |
14802921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 353182 - 353140
Alignment:
| Q |
83 |
aatagagaataggaaaacttatcgattattgactgaggcgtgc |
125 |
Q |
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| T |
353182 |
aatagagaataagtaaactcatcgattattgactgaggcgtgc |
353140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 53837487 - 53837529
Alignment:
| Q |
83 |
aatagagaataggaaaacttatcgattattgactgaggcgtgc |
125 |
Q |
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||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
53837487 |
aatagagaacaagtaaacttatcgattattgactgaggcgtgc |
53837529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 36338893 - 36338935
Alignment:
| Q |
83 |
aatagagaataggaaaacttatcgattattgactgaggcgtgc |
125 |
Q |
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||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
36338893 |
aatagagaatatgtaaacttatcgaatattgactgaggcgtgc |
36338935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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