View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18742_high_10 (Length: 320)
Name: NF18742_high_10
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 10689318 - 10689023
Alignment:
| Q |
17 |
aggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatgatgggatcccaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10689318 |
aggatcatcaaatgaccttttttatagcattgaagttaaggatgcaattattccaccgtggattatctgcaatatatgtgcattgatgatgggatcccaa |
10689219 |
T |
|
| Q |
117 |
gggagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgtcgctttgaaatcaatttgtgataattcctttggtattccaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10689218 |
gggagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgttgctttgaaatcaatttgtgataattcctttggtattccaa |
10689119 |
T |
|
| Q |
217 |
aagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatgattcttatttagcatcattatcccctgtagtataat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10689118 |
aagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatggttcttatttagcatcattatcccctgtagtataat |
10689023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 43560265 - 43560373
Alignment:
| Q |
197 |
taattcctttggtattccaaaagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatgattcttatttagcatcatta |
296 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||| || |
|
|
| T |
43560265 |
taattcctttggcattccagaagctgcagttacgtcttccctatgttcatgtacactaaaaagtgtaaagtactgtgatggttcttatatagcatctcta |
43560364 |
T |
|
| Q |
297 |
tcccctgta |
305 |
Q |
| |
|
||||||||| |
|
|
| T |
43560365 |
tcccctgta |
43560373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 43559262 - 43559349
Alignment:
| Q |
17 |
aggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatg |
104 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||| |||||||| || |||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
43559262 |
aggatcatcagatggtcttttatgtagcattgaaattaaggatacatttattccaccttggattatcagccgtatatgtgcattgatg |
43559349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University