View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18742_high_12 (Length: 249)

Name: NF18742_high_12
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18742_high_12
NF18742_high_12
[»] chr5 (1 HSPs)
chr5 (2-242)||(40961354-40961594)
[»] chr2 (2 HSPs)
chr2 (40-132)||(12129168-12129258)
chr2 (64-132)||(37528913-37528980)
[»] chr6 (1 HSPs)
chr6 (14-132)||(30453614-30453730)
[»] chr1 (2 HSPs)
chr1 (13-84)||(51377599-51377673)
chr1 (62-132)||(41005179-41005248)
[»] chr7 (1 HSPs)
chr7 (62-132)||(31440124-31440193)
[»] chr4 (1 HSPs)
chr4 (15-132)||(32026118-32026233)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 40961354 - 40961594
Alignment:
Q  2 tattttggcagctagtcttacatagacacaattgcaattaaaattatttggacacacaaaacaatgaaagaaattaaaagatataaataagttagtcata 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40961354 tattttggcagttagtcttacatagacacaattgcaattaaaattatttggacacacaaaacaatgaaagaaattaaaagatataaataagttagtcata 40961453  T
Q  102 tcatccaacttcattaaaccattttctctttnnnnnnncattcgtgagtgtgtccaannnnnnnnatttaggtttgtctttaagcaaatatttctcgtat 201  Q
    |||||||||||||||||||||||||||||||       |||| ||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  40961454 tcatccaacttcattaaaccattttctctttaaaaaaacatttgtgagtgtgtccaattttttttatttaggtttgtctttaagcaaatatttctcgtat 40961553  T
Q  202 tttggatagttaagagtgtttataggggtacaagtataatc 242  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  40961554 tttggatagttaagagtgtttataggggtacaagtacaatc 40961594  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 12129168 - 12129258
Alignment:
Q  40 taaaattatttggacacacaaaacaatgaaagaaattaaaagatataaataagttagtcatatcatccaacttcattaaaccattttctcttt 132  Q
    |||||||||||||||||||| |||||||||| ||||||||    |||||||| ||||||||||||| |||| ||||||||||| ||| |||||    
T  12129168 taaaattatttggacacacacaacaatgaaaaaaattaaa--taataaataaattagtcatatcattcaacatcattaaaccaatttatcttt 12129258  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 37528913 - 37528980
Alignment:
Q  64 aatgaaagaaattaaaagatataaataagttagtcatatcatccaacttcattaaaccattttctcttt 132  Q
    ||||||||||||||||||||| |||||| ||||||| ||||  |||  | |||||||||||||||||||    
T  37528913 aatgaaagaaattaaaagata-aaataaattagtcacatcactcaatattattaaaccattttctcttt 37528980  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 30453614 - 30453730
Alignment:
Q  14 tagtcttacatagacacaattgcaattaaaattatttggacacacaaaacaatgaaagaaattaaaagatataaataagttagtcatatcatccaacttc 113  Q
    |||||||||||||| |||| | |||  |||||||||| | |||||| || ||||||| ||| ||||||  |||||||| ||||||| ||||| |||  ||    
T  30453614 tagtcttacatagatacaaatacaaacaaaattatttaggcacacacaataatgaaaaaaactaaaag--ataaataaattagtcaaatcattcaatatc 30453711  T
Q  114 attaaaccattttctcttt 132  Q
    ||||||| ||||| |||||    
T  30453712 attaaactattttatcttt 30453730  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 51377673 - 51377599
Alignment:
Q  13 ctagtcttacata-gacacaattgcaattaaaattatttgg--acacacaaaacaatgaaagaaattaaaagata 84  Q
    ||||||||||||| ||||||||| ||| |||||||||||||  ||||||| |||| || ||||||||||||||||    
T  51377673 ctagtcttacataagacacaattacaagtaaaattatttggtcacacacacaacagtggaagaaattaaaagata 51377599  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 41005248 - 41005179
Alignment:
Q  62 acaatgaaagaaattaaaagatataaataagttagtcatatcatccaacttcattaaaccattttctcttt 132  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||||   ||| ||||||||| |||||||||||    
T  41005248 acaatgaaaaaaattaaaagata-aaataaattagtcacatcacttaacatcattaaactattttctcttt 41005179  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 31440124 - 31440193
Alignment:
Q  62 acaatgaaagaaattaaaagatataaataagttagtcatatcatccaacttcattaaaccattttctcttt 132  Q
    ||||||||||||||||||||||  |||||| ||| ||| ||||  |||| ||||||||| |||||||||||    
T  31440124 acaatgaaagaaattaaaagat-gaaataaattaatcacatcactcaacatcattaaacaattttctcttt 31440193  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 32026233 - 32026118
Alignment:
Q  15 agtcttacatagacacaattgcaattaaaattatttggacacacaaaacaatgaaagaaattaaaagatataaataagttagtcatatcatccaacttca 114  Q
    ||||||||||||| ||||   ||| |||||| |||||| |||||| |||||||||  |||||||| |  |||||||| | |||||  |||| |||| |||    
T  32026233 agtcttacatagatacaaacacaaataaaataatttgggcacacacaacaatgaagaaaattaaatg--ataaataaatcagtcacgtcattcaacatca 32026136  T
Q  115 ttaaaccattttctcttt 132  Q
    |||||||| ||| |||||    
T  32026135 ttaaaccaatttatcttt 32026118  T

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