View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_high_2 (Length: 617)
Name: NF18742_high_2
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 602
Target Start/End: Original strand, 37187724 - 37188297
Alignment:
| Q |
9 |
attattctctaaataataaggtaagagttgatcaacttccgtgaacttaatttaattagtaagtatattatatattatttgtagtggttggagtagggat |
108 |
Q |
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| T |
37187724 |
attattctctaaataataaggtaagagttgatcaacttccgtaaatttaatttaattagtaagtgtattacatattatttggagaggttggagtggggat |
37187823 |
T |
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| Q |
109 |
agagttcgaaccttaaacacggagctgttccacgtttaaatattttagctctatccagtagctactnnnnnnnn-gataagagttgatcaaaggcggtga |
207 |
Q |
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| T |
37187824 |
agagttcgaacct----------------------ttaaatattttagctctatccagtagctactaaaaaaaaagataagagttgatcaaaggcggtga |
37187901 |
T |
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| Q |
208 |
atgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgggcatccacctatacca |
307 |
Q |
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| T |
37187902 |
atgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgggcatccacctatacca |
37188001 |
T |
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| Q |
308 |
aatccaaccatgcctttactttacccactcctcattcctcaccaactttcaacaccccatactatatcttcaattgaaccttcttgtaactttcctttc- |
406 |
Q |
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| T |
37188002 |
aatccaaccatgcctttactttacccactcctcattcctcaccaactttcaacaccccatactatatcttcaattgaaccttcttgtaactttcctttct |
37188101 |
T |
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| Q |
407 |
ttttgcaccctaaaccctataaataccttgccattcttccaaaatatcacaatccatcaacattcaactttctcactatatatataaaaatccattagct |
506 |
Q |
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| T |
37188102 |
ttttgcaccctaaaccctataaataccttgccattcttccaaaatatcacaatccatcaacattcaactttctcactatatatataaaaatccattagct |
37188201 |
T |
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| Q |
507 |
ttctatggcattttcaagagttacattcctagtcattttaatctctacggttgcaattgcctcagctggcaatttttatcaagactttgatataac |
602 |
Q |
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| T |
37188202 |
ttctatggcattttcaagagttacattcctagtcattttaatctctacggttgcaattgcctctgctggcaatttttatcaagactttgatataac |
37188297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 192 - 337
Target Start/End: Original strand, 53491914 - 53492053
Alignment:
| Q |
192 |
tgatcaaaggcggtgaatgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgg |
291 |
Q |
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| T |
53491914 |
tgatcaaaggcggtgaacgttttacacattaaatgtgtgactggctaatgggtatacagcatttcatgcacaaacgtgtgtgatgatatcatttgggtgg |
53492013 |
T |
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| Q |
292 |
gcatccacctataccaaatccaaccatgcctttactttacccactc |
337 |
Q |
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| T |
53492014 |
gcat-----tataccaaa-ccaaccatgtctttactttacccactc |
53492053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 529 - 602
Target Start/End: Original strand, 53492262 - 53492335
Alignment:
| Q |
529 |
acattcctagtcattttaatctctacggttgcaattgcctcagctggcaatttttatcaagactttgatataac |
602 |
Q |
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| T |
53492262 |
acattcctggtcatttttatttctacggttgcaattgcctctgctggcaatttttatcaagactttgatataac |
53492335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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