View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_high_4 (Length: 511)
Name: NF18742_high_4
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 35407572 - 35408063
Alignment:
| Q |
1 |
caaataaatgtcaaataattgagtattgattcttacannnnnnnncaaaagaaataaaggattaaattactataaattttaggtcatgactaatatttag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35407572 |
caaataaatgtcaaataattgagtattgattcttacattttttttcaaaagaaataaaggattaaattactataaattttaggtcataactaatatttag |
35407671 |
T |
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| Q |
101 |
ttaatgtcatcaatttnnnnnnngtgtgtgattactttaccatatgacactnnnnnnnntgtttttggagaaacagaagattcaacctcaactgtttgat |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407672 |
ttaatgtcatcaatttaaaaaaagtgtgtgattactttaccat--gacactaaaaaaaatgtttttggagaaacagaagattcaacctcaactgtttgat |
35407769 |
T |
|
| Q |
201 |
acactc--tatattattttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaaatttgatgcaa |
298 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407770 |
acactcattatattattttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaaatttgatgcaa |
35407869 |
T |
|
| Q |
299 |
aatgtaactttcacagatagatctagcttgcaaatgattctggctgatccttaattaaacttcaagttgttatcttctcattatattaaaatgtcaacaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35407870 |
aatgtaactttcacagatagatctagcttgcaaatgattctggttgatcctcaattaaacttcaagttgttatcttcccattatattaaaatgtcaacaa |
35407969 |
T |
|
| Q |
399 |
gatcaatttttcttttcatcactctataaagttgcaattcaacttgacaccgaatcgttttaataaatttttaatttgagaattgaatgtaatc |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407970 |
gatcaatttttcttttcatcactctataaagttgcaattcaacttgacaccgaatcgttttaataaatttttaatttgagaattgaatgtaatc |
35408063 |
T |
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