View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_1 (Length: 878)
Name: NF18742_low_1
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 17 - 864
Target Start/End: Original strand, 53044689 - 53045538
Alignment:
| Q |
17 |
ataatttcttaccgcattgaatttttattaaaataagatcttggtgctgtagttttatccatttgtgtttggtccctactagacattgttcctagtccct |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044689 |
ataatttcttaccgcactgaatttttattaaaataagatcttggtgctgtagttttatccatttgtgtttggtccctactagacattgttcctagtccct |
53044788 |
T |
|
| Q |
117 |
acattttcactagtttgggttat--gttccacacatagaagtattggttcttaatcgtttgggtttgcccatactgtttctacccaataagccactgttc |
214 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044789 |
actttttcactagtttgggttatatgttccacacatagaagtataggttcttaatcgtttgggtttgcccatactgtttctacccaataagccactgttc |
53044888 |
T |
|
| Q |
215 |
cccattttccaaaaaggtttggttcctatagtttccagttggtaaggtattgtcctttacagtccaaaactaaatcaatggaaactaaaggggccataat |
314 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044889 |
cccattttccacaaaggtttggttcctatagtttccagttggtaaggtattgtcctttacagtccaaaactaaatcaatggaaactaaaggggccataat |
53044988 |
T |
|
| Q |
315 |
aagactatgttagagattttttctagcgatcaagttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggtatataaccttattta |
414 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53044989 |
aagactatgttagagattttttctagcgattaagttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggtatataacctcattta |
53045088 |
T |
|
| Q |
415 |
aggattgaaaaagatattctgagtagcgtccttttggcttggtattccaattaagtttctcacattctacaacataaggatttaaggattcaaaatctct |
514 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53045089 |
aggattgaaaaagctattctgagtagcgtccttttggcttggtattccaattaattttctcacattctacaacataaggatttaaggattcaaaatctct |
53045188 |
T |
|
| Q |
515 |
tgagaaatttcaaaagacatgttctgtacttatccttacttggatggattgattgtgattttaataatagacttcatttccaacattttcttttgcttaa |
614 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53045189 |
tgagaaatttcaaaagacatgttctgtacttatccttacttggatgaattgattgtgattttaataatagacttcatttccaacattttcttttgcttaa |
53045288 |
T |
|
| Q |
615 |
ttgtttatgttgttgacaagtgttataccataactcctcaggtttggcgtgtgaatggtcaagnnnnnnntcttctcgcagccactgaccagtcaaaatt |
714 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53045289 |
ttgtttatgttgttgacaagtgttataccataacttctcaggtttggcgtgtgaatggtcaagaaaaaaatcttctcgcagccactgaccagtcaaaatt |
53045388 |
T |
|
| Q |
715 |
ttatagcggagattgctacatctttcagtattcatatccaggagaagatagggaggagcatcttataggaacatggattggaaagaacagtgttgaggtg |
814 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53045389 |
ttatagcggagattgctacatctttcagtattcatatccaggagaagatagggaggagcatcttataggaacatggattggaaagaacagtgttgaggtg |
53045488 |
T |
|
| Q |
815 |
aaagatttatagtannnnnnnctagttctttctgaatgtgtgtgtctgtg |
864 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
53045489 |
aaagatttatagtatttttttccagttctttctgaatgtgtgtgtctgtg |
53045538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 685 - 822
Target Start/End: Complemental strand, 15962626 - 15962489
Alignment:
| Q |
685 |
tcttctcgcagccactgaccagtcaaaattttatagcggagattgctacatctttcagtattcatatccaggagaagatagggaggagcatcttatagga |
784 |
Q |
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||||||| |||| |||| || |||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||| ||| || ||| || ||| |
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| T |
15962626 |
tcttctcccagcttctgatcaatcaaaattttatagtggagattgcttcatctttcaatattcgtatcctggagaagataaggacgactgtctcattgga |
15962527 |
T |
|
| Q |
785 |
acatggattggaaagaacagtgttgaggtgaaagattt |
822 |
Q |
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| T |
15962526 |
acgtggataggaaagaacagtgttgaggtgaaagattt |
15962489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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