View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_10 (Length: 414)
Name: NF18742_low_10
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 6 - 398
Target Start/End: Original strand, 37217650 - 37218026
Alignment:
| Q |
6 |
agaagcaaagggtgttgaattcagattgcattgaatattaattactagccttttcaaataattttttagagtacgtagtttatgtagtttgttttgataa |
105 |
Q |
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| T |
37217650 |
agaagcaaaaggtgttgaattcagattgcattgaatatta----ctagccttttcaaacaattttttagagtacgtagtttatgtagtttgttttgataa |
37217745 |
T |
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| Q |
106 |
aaaagtggagtcatatattt-taacggtaagttattcaaaataaatacctttaaaatttagtagttataattctgtaggtcttatttctcaaaatggact |
204 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37217746 |
aaaagtggagtcatatatttctaacagtaagttattcaaaataaatacctttaaaatttagtag--------------gtcttatttctcaaaatggact |
37217831 |
T |
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| Q |
205 |
caagcaaataaatgtacttataaatttggtttt-tggactagagtcaaagttcctatatatgcagaattatttggacctttttcttatgaattcttgtct |
303 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217832 |
caagcaaataaatgtacttataaatttggttttttggactagagtcaaagttcctatatatgcagaattatttggacctttttcttatgaattcttgtct |
37217931 |
T |
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| Q |
304 |
tgaaggtaacaagtgaagcttttcttaaacaatcacgactcttcatatataattgctcaacgaaactatcttttttacaagagtatggtccaaac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37217932 |
tgaaggtaacaagtgaagcttttcttaaacaatcacgactcttcatatataattgctcaatgaaactatcttttttacaagagtatggtccaaac |
37218026 |
T |
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