View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_11 (Length: 408)
Name: NF18742_low_11
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_11 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 107 - 408
Target Start/End: Original strand, 37237726 - 37238027
Alignment:
| Q |
107 |
cattcttgcagaacaggtttgtcttttgctattaagatgattatttgttagcttgttcacaaaaatatgagaatggacaaaaggtcaatgcttcctgtga |
206 |
Q |
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| T |
37237726 |
cattcttgcagaacaggtttgtcttttgctattaagatgattatttgttagcttgttcacaaaaatatgagaatggacaaaaggtcaatgcttcctgtga |
37237825 |
T |
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| Q |
207 |
gcttaaatttggttcaatataatcaggtattgctaagggttcagctgttggtatagctatggcaggaatatttggacttctattatttgttatctatata |
306 |
Q |
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| T |
37237826 |
gcttaaatttggttcaatataagcaggtattgctaagggttcagctgttggtatagctatggcaggaatatttggacttctattatttgttatctatata |
37237925 |
T |
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| Q |
307 |
tatgccaaatacttccaaaagaaggaggaagagaaaactaaacttccacaaacttctagggcattttcaactcaagatggtaatatttttaaacattcat |
406 |
Q |
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| T |
37237926 |
tatgccaaatacttccaaaagaaggaagaagagaaaactaaacttccacaaacttctagggcattttcaactcaagatggtaatatttttaaacattcat |
37238025 |
T |
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| Q |
407 |
at |
408 |
Q |
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|| |
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| T |
37238026 |
at |
37238027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37237620 - 37237693
Alignment:
| Q |
1 |
cattgattatctcaattttcatttttgaatgatttatagaagaagtaaatattgcttcatataatttggttata |
74 |
Q |
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| T |
37237620 |
cattgattatctcaattttcatttttgaatgatttatagaagaagtaaatattgcttcatataatttggttata |
37237693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 33595785 - 33595685
Alignment:
| Q |
290 |
tatttgttatctatatatatgccaaatacttccaaaagaaggaggaagagaaaactaaacttccacaaacttctagggcattttcaactcaagatggtaa |
389 |
Q |
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| T |
33595785 |
tatttgttatctatatatatgccaaatacttccaaaagaaggaagaagagaaaactaaactcacacgaatttctatggcagtttcaactcaagatggtaa |
33595686 |
T |
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| Q |
390 |
t |
390 |
Q |
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| T |
33595685 |
t |
33595685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 230 - 350
Target Start/End: Original strand, 37309735 - 37309855
Alignment:
| Q |
230 |
caggtattgctaagggttcagctgttggtatagctatggcaggaatatttggacttctattatttgttatctatatatatgccaaatacttccaaaagaa |
329 |
Q |
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||||| ||||||||||| || |||| |||||| || |||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||| |
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| T |
37309735 |
caggtcttgctaagggtgcaactgtgggtataataatagcaggaatatttggacttctattattagttatctatatatatgtcagatacttcaaaaagaa |
37309834 |
T |
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| Q |
330 |
ggaggaagagaaaactaaact |
350 |
Q |
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||| ||||||||||||||||| |
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| T |
37309835 |
ggaagaagagaaaactaaact |
37309855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 33595872 - 33595815
Alignment:
| Q |
159 |
ttgttcacaaaaatatgagaatggacaaaaggtcaatgcttcctgtgagcttaaattt |
216 |
Q |
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| T |
33595872 |
ttgttcacaaaactatgcaaatagaccaaaggtcaatgcttcttgtgagcttaaattt |
33595815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 33595984 - 33595947
Alignment:
| Q |
34 |
ttatagaagaagtaaatattgcttcatataatttggtt |
71 |
Q |
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| T |
33595984 |
ttatataagaagtaaatattgcttcatataatttggtt |
33595947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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