View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_13 (Length: 289)
Name: NF18742_low_13
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 40960797 - 40961050
Alignment:
| Q |
17 |
atctactgcatttcactaaaaatcaacgagacaatccaatatgccaatataaggttgagaatacgcgttatatattgccacttttgccaaattatgaaca |
116 |
Q |
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| T |
40960797 |
atctaatgcatttcattaaaaatcaacgagacaatccaatataccaatataaggttgagaatacgcgttatatattgccacttttgccagattatgaaca |
40960896 |
T |
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| Q |
117 |
actatattaacttctcttctaaagaacttaatataagagttattaaaaacgacgataaaatgctatgagatttagatagaatagaacctaacgagattga |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
40960897 |
actatattaacttctcttctaaagaactcaatataagagttattaaaaacgacaataaaatgctatgagatttagataaaatagaacctaaagagattga |
40960996 |
T |
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| Q |
217 |
ccatgtactgctccgttgaaagagtctactacatttttagagtaaagagtaaat |
270 |
Q |
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| T |
40960997 |
ccatgcactgctccgttgaaaaagtctactacatttttagagtaaagagtaaat |
40961050 |
T |
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