View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_14 (Length: 250)
Name: NF18742_low_14
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 37238026 - 37238260
Alignment:
| Q |
1 |
attctaagttattattaaaaatatttcttttaacctatcttatgatataagtatttatttcagtatttgagagagcttgcgaaaatagcttataacatgt |
100 |
Q |
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| T |
37238026 |
attctaagttcttattaaaaatatttcttttaacctatcttatgatataagtatttatttcagtatttgagagagcttgcgaaaatagcttataacatgt |
37238125 |
T |
|
| Q |
101 |
ttgtttcattaaactgtatttatttcattaaatagtttatacttgctgatttttgtttatgttattggtgaagcctcaggtagtgcagaatatgaaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37238126 |
ttgtttcattaaactgtatttatttcattaaatagtttatacttgctgatttttgtttatgttattggtgaagcctcaggtagtgcagaatatgaaactt |
37238225 |
T |
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| Q |
201 |
caggttccagtgggcatgctactggtagtgctgcc |
235 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
37238226 |
caggatccagtgggcatgctactggtagtgctgcc |
37238260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 33595488 - 33595427
Alignment:
| Q |
169 |
tgaagcctcaggtagtgcagaatatgaaacttcaggttccagtgggcatgctactggtagtg |
230 |
Q |
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||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||| |
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| T |
33595488 |
tgaagcctcaggtagtggagaatatgaaacttcaggatcctgtgggcatgccactggtagtg |
33595427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 37310106 - 37310155
Alignment:
| Q |
175 |
ctcaggtagtgcagaatatgaaacttcaggttccagtgggcatgctactg |
224 |
Q |
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||||||||||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
37310106 |
ctcaggtagtgcagagtatgaaacttcaggatccagtgtgcatgctactg |
37310155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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