View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18742_low_17 (Length: 232)
Name: NF18742_low_17
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 158592 - 158394
Alignment:
| Q |
18 |
aaaaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158592 |
aaaaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacac |
158493 |
T |
|
| Q |
118 |
acccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttatgtcatgctaaaggtagaaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
158492 |
acccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttgtgtcatgctaaaggtagaaac |
158394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University