View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_3 (Length: 570)
Name: NF18742_low_3
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 49116805 - 49116492
Alignment:
| Q |
9 |
acatcatcataccctaacgtttggaccctatgttggtcctatgagcaaccatttcttgacaccaacataaacatttgaaccacaattgtcatggtttttg |
108 |
Q |
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| T |
49116805 |
acatcatcataccctaacgtttggaccccatgttggtcctatgagcaaccatttcttgacaccaacataaacatttgaaccacaattgtcatggtttttg |
49116706 |
T |
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| Q |
109 |
tcgagttttatggatatatgagaatgaagatgatattcaattggtggatatttttgttttagattgaagaaaactggttgatttttggggaagatgatcg |
208 |
Q |
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| T |
49116705 |
tcgagttttatggatatatgagaatgaagatgatattcaattggtggatatttttgttttagattgaagaaaactggttgatttttggggaagatgatcg |
49116606 |
T |
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| Q |
209 |
aatggtgcaacgattgattgattacatatcaaatgtcacatacgttaacattgtttatgtgaatatggatgaaacttgcactaaaaacaatcagttaaaa |
308 |
Q |
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| T |
49116605 |
aatggtgcaacgattgattgattacatatcaaaagtcacataagttaacattgtttatgtgaatatggatgaaacttgcactaaaaacaatcagttaaaa |
49116506 |
T |
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| Q |
309 |
actttggaggtttg |
322 |
Q |
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| T |
49116505 |
actttggaggtttg |
49116492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 392 - 552
Target Start/End: Complemental strand, 49116187 - 49116027
Alignment:
| Q |
392 |
attacaaatagcctagttacttatgatactcaattgttgcttgctaatttgatcatgatatcagggaaaaaggaaatatacaccactagagcaaccaact |
491 |
Q |
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| T |
49116187 |
attataaatagcctagttacttatgatactcaattgttgcttgctaatttgatcatgatatcagggaaaaaggaaatatacaccactagagcaaccaact |
49116088 |
T |
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| Q |
492 |
gctcaacaagtgttgattgaaaaagtgtctgcaggtcccacaactttgtttatgatgggag |
552 |
Q |
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| T |
49116087 |
gctcaacaagtgttgattgaaaaagtgtctgcaggtcccacaactttgtttatgatgggag |
49116027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 404 - 552
Target Start/End: Complemental strand, 49103877 - 49103729
Alignment:
| Q |
404 |
ctagttacttatgatactcaattgttgcttgctaatttgatcatgatatcagggaaaaaggaaatatacaccactagagcaaccaactgctcaacaagtg |
503 |
Q |
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| T |
49103877 |
ctagttacttatgatactcaatagtttcttgctaatttgatcatggcatcagggaaaaaggaaatatacaccactagagcaaccaactgctcaacaagtg |
49103778 |
T |
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| Q |
504 |
ttgattgaaaaagtgtctgcaggtcccacaactttgtttatgatgggag |
552 |
Q |
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| T |
49103777 |
ttgattgaaaaagtgtctgcaggtcccacaactttgtttatgatgggag |
49103729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 49116365 - 49116303
Alignment:
| Q |
337 |
tactaacataacttatgataacacttgtctataaaaagaagttcaaaactcttccattacaaa |
399 |
Q |
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| T |
49116365 |
tactaacataacttatgataacacttgtctataaaaagaagttcaaaactcttccattgcaaa |
49116303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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