View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18742_low_5 (Length: 492)

Name: NF18742_low_5
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18742_low_5
NF18742_low_5
[»] chr2 (2 HSPs)
chr2 (18-479)||(33815065-33815526)
chr2 (69-104)||(32271385-32271420)
[»] chr8 (2 HSPs)
chr8 (69-104)||(21634847-21634882)
chr8 (72-104)||(5515537-5515569)
[»] chr7 (7 HSPs)
chr7 (69-104)||(32089306-32089341)
chr7 (69-104)||(32093063-32093098)
chr7 (69-104)||(32096779-32096814)
chr7 (69-104)||(39128533-39128568)
chr7 (69-104)||(39478477-39478512)
chr7 (69-104)||(41706670-41706705)
chr7 (69-104)||(41812181-41812216)
[»] chr6 (2 HSPs)
chr6 (69-104)||(26217275-26217310)
chr6 (70-104)||(11187926-11187960)
[»] chr3 (3 HSPs)
chr3 (69-104)||(38044562-38044597)
chr3 (69-104)||(48838007-48838042)
chr3 (69-104)||(50152374-50152409)
[»] chr1 (1 HSPs)
chr1 (69-104)||(31141989-31142024)
[»] chr4 (2 HSPs)
chr4 (69-103)||(7772341-7772375)
chr4 (69-103)||(7777949-7777983)


Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 33815526 - 33815065
Alignment:
Q  18 atttagtgtgtgtataatgtgcacactccacaaacaaatgtttctttgaggtaaaattggaacgatacaaagaagattagcatggcctcctcatcgagga 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33815526 atttagtgtgtatataatgtgcacactccacaaacaaatgtttctttgaggtaaaattggaacgatacgaagaagattagcatggcctcctcatcgagga 33815427  T
Q  118 tgacacgcacatattaagatacggtccnnnnnnnnnnnnnnnnntcctgtggctttatcttcttccattgcttcttttctgcaggtaagcttctcatatc 217  Q
    |||||||||||||||||||||||||||                 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815426 tgacacgcacatattaagatacggtccaaaaaacaaaacaaaaatcccgtggctttatcttcttccattgcttcttttctgcaggtaagcttctcatatc 33815327  T
Q  218 ttcaccatcctggtaatcgcttctcttttcaaccatattttcatcatccttcaagcttccatatgcaggaaactcagtcacattgaaccagtgacattat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815326 ttcaccatcctggtaatcgcttctcttttcaaccatattttcatcatccttcaagcttccatatgcaggaaactcagtcacattgaaccagtgacattat 33815227  T
Q  318 tcaaaacttgacaatgtttagggtttatgcataatctgattaacattgctcaacaaattgattaaaattttgacatgtctcagaaaaatggactattgaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815226 tcaaaacttgacaatgtttagggtttatgcataatctgattaacattgctcaacaaattgattaaaattttgacatgtctcagaaaaatggactattgaa 33815127  T
Q  418 tgtagctacttcattttagaagatgatttgatatgtgttgtttttatttgtcttggttccct 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815126 tgtagctacttcattttagaagatgatttgatatgtgttgtttttatttgtcttggttccct 33815065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 32271420 - 32271385
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||||||||||||| |||||||    
T  32271420 taaaattggaacgatacaaagaagattatcatggcc 32271385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 21634882 - 21634847
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  21634882 taaaattggaacgatacagagaagattagcatggcc 21634847  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 5515537 - 5515569
Alignment:
Q  72 aattggaacgatacaaagaagattagcatggcc 104  Q
    ||||||||||||||| |||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcc 5515569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 32089341 - 32089306
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  32089341 taaaattggaacgatacagagaagattagcatggcc 32089306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 32093098 - 32093063
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  32093098 taaaattggaacgatacagagaagattagcatggcc 32093063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 32096814 - 32096779
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  32096814 taaaattggaacgatacagagaagattagcatggcc 32096779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 39128568 - 39128533
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  39128568 taaaattggaacgatacagagaagattagcatggcc 39128533  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 39478477 - 39478512
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  39478477 taaaattggaacgatacagagaagattagcatggcc 39478512  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 41706705 - 41706670
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  41706705 taaaattggaacgatacagagaagattagcatggcc 41706670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 41812181 - 41812216
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  41812181 taaaattggaacgatacagagaagattagcatggcc 41812216  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 26217310 - 26217275
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  26217310 taaaattggaacgatacagagaagattagcatggcc 26217275  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 11187926 - 11187960
Alignment:
Q  70 aaaattggaacgatacaaagaagattagcatggcc 104  Q
    ||||||||||||||||| |||||||||||||||||    
T  11187926 aaaattggaacgatacagagaagattagcatggcc 11187960  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 38044597 - 38044562
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  38044597 taaaattggaacgatacagagaagattagcatggcc 38044562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 48838007 - 48838042
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  48838007 taaaattggaacgatacagagaagattagcatggcc 48838042  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 50152374 - 50152409
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  50152374 taaaattggaacgatacagagaagattagcatggcc 50152409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 31142024 - 31141989
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggcc 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  31142024 taaaattggaacgatacagagaagattagcatggcc 31141989  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 7772375 - 7772341
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggc 103  Q
    |||||||||||||||||| ||||||||||||||||    
T  7772375 taaaattggaacgatacagagaagattagcatggc 7772341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 7777983 - 7777949
Alignment:
Q  69 taaaattggaacgatacaaagaagattagcatggc 103  Q
    |||||||||||||||||| ||||||||||||||||    
T  7777983 taaaattggaacgatacagagaagattagcatggc 7777949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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