View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_7 (Length: 451)
Name: NF18742_low_7
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 167 - 446
Target Start/End: Complemental strand, 31083238 - 31082963
Alignment:
| Q |
167 |
aaaagaattaatgtttgtttaagttttctgaatnnnnnnngttatgcaaattttnnnnnnnttaataaacttgttgatggacgacatattactagtttac |
266 |
Q |
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| T |
31083238 |
aaaagaattaatgtttgtttaagttttctgaataaaaaaagttatgcaaatttttaaaaaattaataaacttgttaatggac---atattactagtttac |
31083142 |
T |
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| Q |
267 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
366 |
Q |
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| T |
31083141 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
31083042 |
T |
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| Q |
367 |
aatcagttattgcattttcgattcgatgatcactctcataccaggttcaaagggtttaagctacagggacctttgctact |
446 |
Q |
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| T |
31083041 |
aatcagttattgcattttcgattcgatgatcactctcataccgggttcaaaggg-ttaagctgcagggatctttgttact |
31082963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 31083338 - 31083253
Alignment:
| Q |
97 |
cttagatgtcctacaatatccttgacatagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
182 |
Q |
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| T |
31083338 |
cttagatgtcctacaatatccttgacatagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
31083253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 31084420 - 31084336
Alignment:
| Q |
17 |
aatagatctaacccctttaagcaagttgataggagtttgatattttatgactattgtatatagagaaaattcgaatacatcttag |
101 |
Q |
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| T |
31084420 |
aatagatctaacccctttaagcaagttgataggagttcgatattttatgactactgtatatagggaaaattcgaatccatcttag |
31084336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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