View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_8 (Length: 435)
Name: NF18742_low_8
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 435
Target Start/End: Original strand, 8520217 - 8520645
Alignment:
| Q |
9 |
atgaaaggaaaacccaggaccacttgacaagcagaagaatgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcat |
108 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8520217 |
atgaaaggaaaacccaggaccactcgacaagcaaaagaatgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcat |
8520316 |
T |
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| Q |
109 |
gtcatattaaatcaagctggttggattagtatgacaaaatgcattatcatcttcatattatagcaggctgctcttgtcagttgtagatcctatatataga |
208 |
Q |
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| T |
8520317 |
gtcatattaaatcaagctggttggattagtatgacaaaatgcattatcatcttcatattatagcaggctgctcttgtcagttgcagatcctatatataga |
8520416 |
T |
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| Q |
209 |
cttcttataggataatatataacattcaggcagtagctgcaacatcaaaatttagtgtatgtcctaagttacttcacagtttgcatttcattgaacgaga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8520417 |
cttcttataggataatatataacattcaggcagtagctgcaacatcaaaatttagtgtatgtcctaagttacttcacagtttgcatttcattgaacgaga |
8520516 |
T |
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| Q |
309 |
atttaaagtgctaaataatgattgtgaacgttttgtaagccatcaggggcatcaatttttaagaatcattattaaatattt--tgtgtggcttatgcagg |
406 |
Q |
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| T |
8520517 |
atttaaagtgctaaataatgactgtgaacgttttgtaagccatcaggggcatcaatttttaagaatcattattaaatattttatgtgtggcttatgcagg |
8520616 |
T |
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| Q |
407 |
atcatatatatgcaattgagggtaccata |
435 |
Q |
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| T |
8520617 |
atcatatatatgcaattgagggtaccata |
8520645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 384
Target Start/End: Original strand, 18759906 - 18760245
Alignment:
| Q |
48 |
tgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaatcaagctggttggattagtatgacaaaa |
147 |
Q |
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| T |
18759906 |
tgacaaatagagaatttcagcaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaagcaggatagatcaatgggtatgataaaa |
18760005 |
T |
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| Q |
148 |
tgcattatcatcttcat-attatagcaggctgctcttgtcagtt--------gtagatcctatatatagacttcttataggataatatataacattcagg |
238 |
Q |
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| T |
18760006 |
tacattatcatcttcatgtttttagcagactgctcttgtcagttgcagatcggcagatcctatatataaacttcttataggataatatataacatgca-- |
18760103 |
T |
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| Q |
239 |
cagtagctgcaacatcaaaatttagtgtatgtcctaagttacttcacagtttgcatttcattgaacgagaatttaaagtgc----taaataatgattgtg |
334 |
Q |
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||||||||||||| || | || ||||||||| |||| ||||||||| ||||||| | |||| ||||||| | ||||||||||||| |
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| T |
18760104 |
---------taacatcaaaatttgctgactttcttaagttactccacaatttgcatttgattgaaccaaaattgaaagtgcaacatcaataatgattgtg |
18760194 |
T |
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| Q |
335 |
-aacgttttgtaagccatcaggggcatcaatttttaagaatcattattaaa |
384 |
Q |
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| T |
18760195 |
taagtttttgtaagacatatgggacatcaatttttaagaatcattattaaa |
18760245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 384
Target Start/End: Complemental strand, 10981747 - 10981408
Alignment:
| Q |
48 |
tgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaatcaagctggttggattagtatgacaaaa |
147 |
Q |
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| T |
10981747 |
tgacaaatagagaatttcagcaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaagcaggatagatcaatgggtatgataaaa |
10981648 |
T |
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| Q |
148 |
tgcattatcatcttcat-attatagcaggctgctcttgtcagtt--------gtagatcctatatatagacttcttataggataatatataacattcagg |
238 |
Q |
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| T |
10981647 |
tacattatcatcttcatgtttttagcagactgctcttgtcagttgcagatcggcagatcctatatataaacttcttataggataatatataacatgca-- |
10981550 |
T |
|
| Q |
239 |
cagtagctgcaacatcaaaatttagtgtatgtcctaagttacttcacagtttgcatttcattgaacgagaatttaaagtgc----taaataatgattgtg |
334 |
Q |
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| T |
10981549 |
---------taacatcaaaatttgctgactttcttaagttactccacaatttgcatttgattgaaccaaaattgaaagtgcaacatcaataatgattgtg |
10981459 |
T |
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| Q |
335 |
-aacgttttgtaagccatcaggggcatcaatttttaagaatcattattaaa |
384 |
Q |
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| T |
10981458 |
taagtttttgtaagacatatgggacatcaatttttaagaatcattattaaa |
10981408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 11524352 - 11524508
Alignment:
| Q |
140 |
tgacaaaa-tgcattatcatcttcatattatagcaggctgctcttgtcagttgtagatcctatatatagacttcttataggataatatataacattcagg |
238 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||| ||| ||||| || ||||||||| |||||||||| |||||||||| | || | |||| |
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| T |
11524352 |
tgacaaaactgcattatcttcttcatattatagcaggctgctcatgttagttgcagctcctatatacagacttcttacaggataatatcttacttgcagg |
11524451 |
T |
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| Q |
239 |
cagtagctgcaacatcaaaatttagtgtatgtcctaagttacttcacagtttgcatt |
295 |
Q |
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|| |||||||| ||||||||| | || ||| |||||||||||| |||||||||| |
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| T |
11524452 |
cactagctgcagcatcaaaatctgttgacagtcttaagttacttcatagtttgcatt |
11524508 |
T |
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