View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18742_low_9 (Length: 423)
Name: NF18742_low_9
Description: NF18742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18742_low_9 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0757 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 16096956 - 16097154
Alignment:
| Q |
17 |
aggaaaattgagaaaataaattcaacttcattcatgaacgtcttagggccaatacagtagcttgtacctgtgtcgaaagttcctctatatttgtttactc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16096956 |
aggaaaattgagaaaataaattcaacttcattcatgaacgtcttagggccaatacagtagcttgtacctgtgtcgaaagttcctctatatttgtttactc |
16097055 |
T |
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| Q |
117 |
atcaacttttggttggccaagatagcactattttcacttataccaaatacccctctcttgcctcgctcggtctcggcacgatactcattttgagctatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16097056 |
atcaacttttggttggccaagatagcactattttcacttacaccaaatacccctctcttgcctcgctcggtctcggcacgatactcattttgagctatg |
16097154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 223 - 423
Target Start/End: Original strand, 16097235 - 16097435
Alignment:
| Q |
223 |
ttaagccttaaacttttggtaaatatttacatctgggttttttcacccaagtcatgggttggtcatctttttagtaacagtttgaacctctcccacgcat |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
16097235 |
ttaagccttaaacttttggtaaatatttacatctgggttttttcacccaagtcatgggttggtcatctttttagtaacagtttaaacctctcccaagcat |
16097334 |
T |
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| Q |
323 |
catagagagattcaccgtcaccttgcataaaatttgtgagctcatgtcttttctcccaatactttgacataggaaaaacctcttgaagaaacttaagtta |
422 |
Q |
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| T |
16097335 |
catagagagattcaccgtcaccttgcataaaatttgtgagctcatgtcttttctcccaatactttgacataggaaaaacctcttgaagaaacttaagtta |
16097434 |
T |
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| Q |
423 |
t |
423 |
Q |
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| |
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| T |
16097435 |
t |
16097435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 421
Target Start/End: Complemental strand, 38624700 - 38624566
Alignment:
| Q |
286 |
catctttttagtaacagtttgaacctctcccacgcatcatagagagattcaccgtcaccttgcataaaatttgtgagctcatgtcttttctcccaatact |
385 |
Q |
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||||| |||| |||||| |||||||||||||| |||| || ||||||||| || || ||| |||| || |||| || ||||||||||||||||| | |
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| T |
38624700 |
catctctttaataacagcttgaacctctcccaagcattatgaagagattcagactctccctgcctaaagttggtgatttcttgtcttttctcccaatatt |
38624601 |
T |
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| Q |
386 |
ttgacataggaaaaacctcttgaagaaacttaagtt |
421 |
Q |
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| T |
38624600 |
ttggcataggaaagatctc-tggagaaacttaagtt |
38624566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 19863490 - 19863528
Alignment:
| Q |
297 |
taacagtttgaacctctcccacgcatcatagagagattc |
335 |
Q |
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| T |
19863490 |
taacagtttgaacctctcccaagcatcatagagagattc |
19863528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 64579 - 64542
Alignment:
| Q |
297 |
taacagtttgaacctctcccacgcatcatagagagatt |
334 |
Q |
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| T |
64579 |
taacagtttgaacctctcccaagcatcatagagagatt |
64542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0757 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0757
Description:
Target: scaffold0757; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 6026 - 5988
Alignment:
| Q |
297 |
taacagtttgaacctctcccacgcatcatagagagattc |
335 |
Q |
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||||||| ||||||||||||| ||||||||||||||||| |
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| T |
6026 |
taacagtctgaacctctcccaagcatcatagagagattc |
5988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 12815844 - 12815896
Alignment:
| Q |
171 |
ctcttgcctcgctcggtctcggcacgatactcattttgagctatgctctcaat |
223 |
Q |
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||||| || ||||||||||||||||||| | |||||||||| ||| ||||||| |
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| T |
12815844 |
ctcttaccacgctcggtctcggcacgattcgcattttgagccatgttctcaat |
12815896 |
T |
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