View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18743_high_11 (Length: 507)

Name: NF18743_high_11
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18743_high_11
NF18743_high_11
[»] chr8 (9 HSPs)
chr8 (20-497)||(8690606-8691084)
chr8 (90-384)||(8704991-8705294)
chr8 (90-314)||(8740138-8740370)
chr8 (237-383)||(8722069-8722216)
chr8 (90-211)||(14372433-14372554)
chr8 (237-316)||(8723482-8723561)
chr8 (242-383)||(8738501-8738643)
chr8 (89-184)||(8738729-8738824)
chr8 (90-232)||(8723586-8723729)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 8691084 - 8690606
Alignment:
Q  20 gtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8691084 gtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaa 8690985  T
Q  120 tcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8690984 tcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaa 8690885  T
Q  220 aataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8690884 aataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaa 8690785  T
Q  320 c-nnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgct 418  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8690784 cttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgct 8690685  T
Q  419 tgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaatgagacaaagagagactttctaataccacctatg 497  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  8690684 tgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaatgagacaaagagagactttctaataccacctatg 8690606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 90 - 384
Target Start/End: Complemental strand, 8705294 - 8704991
Alignment:
Q  90 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 189  Q
    |||||||||||||| || || || || |||||   |||||| || ||||||||||| || ||||  |||||||  |  ||| |||||||||||||| |||    
T  8705294 ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaa 8705195  T
Q  190 aacattagaaagattgcatttttgtgagaaaataatgatggg---gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttca 281  Q
    ||||||| |||| |||||||||| |||||||||||||| |||   |||||||     ||||||||| |||||||||||  | ||||||||||||||||||    
T  8705194 aacattaaaaaggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttca 8705095  T
Q  282 gctataacattgttgacaatggaatcattaccaagtaac-nnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag 380  Q
    |||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8705094 gctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag 8704995  T
Q  381 gaac 384  Q
    ||||    
T  8704994 gaac 8704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 8740370 - 8740138
Alignment:
Q  90 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 189  Q
    |||||||||||||| ||||| || ||||| ||   |||||| ||||||||||||||  | ||||  ||||||||||  |||| ||||||||||||| |||    
T  8740370 ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaa 8740271  T
Q  190 aacattagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttca 281  Q
    |||||||  ||| ||| |||  | | ||||||||||||| |||||||||        ||||||||| |||||||||||| ||||||||||||||||||||    
T  8740270 aacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttca 8740171  T
Q  282 gctataacattgttgacaatggaatcattacca 314  Q
    |||||||||||||| ||||||||||||||||||    
T  8740170 gctataacattgtttacaatggaatcattacca 8740138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 237 - 383
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
Q  237 ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaac-nnnnnnngagatagt 335  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||| |||||||| ||||     ||||| |||||||||        ||||||||    
T  8722216 ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt 8722117  T
Q  336 ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa 383  Q
     |||||||||||||| |||||||||  |||||||||||||||||||||    
T  8722116 agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa 8722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 14372433 - 14372554
Alignment:
Q  90 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 189  Q
    |||||||||||||| ||||| || ||||||||   |||||| |||||||||||||| || ||||  ||||||| ||  |||||||||||||||||| ||     
T  14372433 ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaag 14372532  T
Q  190 aacattagaaagattgcatttt 211  Q
    ||||||| |||| |||||||||    
T  14372533 aacattaaaaaggttgcatttt 14372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
Q  237 ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag 316  Q
    ||||||||||| ||||| |||||||||||||  | |||||||||||||||||||||||| |||||||  |||||||||||    
T  8723561 ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag 8723482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 383
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
Q  242 tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaac-nnnnnnngagatagtggttt 340  Q
    |||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| |||  |||| ||||||||||||||        ||| ||||| ||     
T  8738643 tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta 8738544  T
Q  341 acaagctcttcatctgttggtcggaatctgaatccaacaggaa 383  Q
    || || ||||||| ||||||||||||||||||||| |||||||    
T  8738543 actagttcttcatttgttggtcggaatctgaatccgacaggaa 8738501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 8738824 - 8738729
Alignment:
Q  89 gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga 184  Q
    ||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| || ||||  |||||||| |  |||| |||||| |||||    
T  8738824 gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaaga 8738729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 8723729 - 8723586
Alignment:
Q  90 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 189  Q
    |||||||||||||| ||||| || ||||| ||   ||| || ||||||||||||||  | ||||  ||||||||||  |||| |||||||||| | ||||    
T  8723729 ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctgaaaaacaacaaa 8723630  T
Q  190 aaca-ttagaaagattgcatttttgtgagaaaataatgatgggg 232  Q
    |||| | | ||| ||  ||||||||||  |||||||||||||||    
T  8723629 aacagtaataaaaatcacatttttgtgccaaaataatgatgggg 8723586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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