View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_high_22 (Length: 379)
Name: NF18743_high_22
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 39426676 - 39426961
Alignment:
| Q |
1 |
attcacaattttaggtgggttttgggtgaaattatgttctcctatttccataaagtgattatgttttaagaaattacatagtaaaaataaatgggttatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39426676 |
attcacaattttaggtgggttttgggtgaaattatgttctcctatttccataaagtgattatgttttaagaaattacataataaaaataaatgggttatg |
39426775 |
T |
|
| Q |
101 |
ttgcatgcattgaaattgttttgctcctgtgtagaaattcacgagtgccatgttaaatttccaaattacattctccttggttccaaaatttgtcattttg |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39426776 |
ttgcatgcattgaaattgttttgctcttgtgtagaaattcatgagtgccatgttaaatttccaaattacattctccttggttccaaaatttgtcattttg |
39426875 |
T |
|
| Q |
201 |
aactattttatgatgtccaatgttgtgctacattctccttggttccaagttactttgaatccataatatcatcataataatttatt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39426876 |
aactattttatgatgtccaatgttgtgctacattctccttggttccaagttactttgaatccataatatcatcataataacttatt |
39426961 |
T |
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