View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_high_24 (Length: 355)
Name: NF18743_high_24
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 55383936 - 55383597
Alignment:
| Q |
18 |
atgaatacgctcatcaattctctctcgaccaaactttccaagtttggacaagaattcttgtagtagttgtaagaaagttggtttccttttacaccaaatg |
117 |
Q |
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| T |
55383936 |
atgaatacgctcatcaattctctctcgaccaaactttccaagtttggacaagaattcttgtagtagttgtaagaaagttggtttccttttacaccaaatg |
55383837 |
T |
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| Q |
118 |
aaagtggcatagccataataaccacagtggcaagaagaatcaaaggaagagatatttccatttctcttctgtgcagaaggaatgtgttagtgttag--ta |
215 |
Q |
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| T |
55383836 |
aaagtggcatagccataataaccacagtggaaagaagaatcaaaggaagagatatttccatttctcttctgtgcagaaggaatgtgttagtgttagtata |
55383737 |
T |
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| Q |
216 |
tgaggaataatggaaatttatttatatttgcgcaagtgtttgtgattttgttgctgatttgaatgatacggttggctgtgtagtataattgagttgagta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55383736 |
tgaggaataatggaaatttatttatatttgcgcaagtgtttgtgattttgttgctgatttgaatgatacggttggctgtgtagtataattgggttgagta |
55383637 |
T |
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| Q |
316 |
ggcatatacatttgccaaagtcatacacatatccttgtca |
355 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
55383636 |
ggcatatacatttgccaaagtcatagacatatccttgtca |
55383597 |
T |
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