View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_high_25 (Length: 346)
Name: NF18743_high_25
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 76 - 328
Target Start/End: Complemental strand, 32032184 - 32031926
Alignment:
| Q |
76 |
cttcccaaagagaaatctaggcttttcttattacttattagggaccttaatatcacccacatgagtaatattttgaactctagtaagtgtttgaagatca |
175 |
Q |
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| T |
32032184 |
cttcccaaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatca |
32032085 |
T |
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| Q |
176 |
taagcaatccaacaccttgagttatccttgtggtagaaatacccatcaca------atcattggtacatttgtttccacatgtatcttcacttactctat |
269 |
Q |
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| T |
32032084 |
taagctttccaacaccttgagttatccttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactat |
32031985 |
T |
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| Q |
270 |
caccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaat |
328 |
Q |
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| T |
32031984 |
caccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaat |
32031926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 88 - 328
Target Start/End: Complemental strand, 32065312 - 32065066
Alignment:
| Q |
88 |
aaatctaggcttttcttattacttattagggaccttaatatcacccacatgagtaatattttgaactctagtaagtgtttgaagatcataagcaatccaa |
187 |
Q |
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| T |
32065312 |
aaatctaagcttatcttattacttattaggcaccttaatataacccacatgtgtggtattttgaactctagtaagagtttgaagatcataagctatccaa |
32065213 |
T |
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| Q |
188 |
caccttgagttatccttgtggtagaaatacccatcaca------atcattggtacatttgtttccacatgtatcttcacttactctatcaccagtagtgt |
281 |
Q |
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| T |
32065212 |
caccttgattcatccttatggtagaaatacccaacacacttacaatcattggtacatttgtttccacatgcatcttcacttactatatcaccactagtgt |
32065113 |
T |
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| Q |
282 |
atttgctcatgtagtgctcaactccttcaattttgtagtaatgaaat |
328 |
Q |
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| T |
32065112 |
atttgttcatgtaatgctcaactccttcaattttgtagtaatgaaat |
32065066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 32072458 - 32072390
Alignment:
| Q |
259 |
acttactctatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaa |
327 |
Q |
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| T |
32072458 |
acttactctatcaccaacagtgtatttgctcatataatgctcaactccttcaattttgtagtaatgaaa |
32072390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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