View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18743_high_27 (Length: 345)

Name: NF18743_high_27
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18743_high_27
NF18743_high_27
[»] chr3 (21 HSPs)
chr3 (16-324)||(22458980-22459288)
chr3 (16-324)||(22481961-22482269)
chr3 (69-217)||(22431704-22431852)
chr3 (101-215)||(22631054-22631168)
chr3 (136-200)||(22358625-22358689)
chr3 (136-200)||(22636126-22636190)
chr3 (256-324)||(22437395-22437463)
chr3 (256-326)||(22431909-22431979)
chr3 (239-324)||(22207648-22207733)
chr3 (256-325)||(22632626-22632695)
chr3 (256-325)||(22636267-22636336)
chr3 (101-215)||(22632450-22632564)
chr3 (256-325)||(22358766-22358835)
chr3 (101-203)||(22468533-22468635)
chr3 (259-308)||(2748680-2748729)
chr3 (259-308)||(2768751-2768800)
chr3 (259-308)||(2839007-2839056)
chr3 (259-308)||(2856217-2856266)
chr3 (256-325)||(22443500-22443569)
chr3 (256-325)||(22631230-22631299)
chr3 (69-217)||(22368465-22368613)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 22458980 - 22459288
Alignment:
Q  16 acatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458980 acatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatat 22459079  T
Q  116 gcaagctatgttcttttccacttgtatcattcatttcacttatttgggatttgattttctgaatcttgtatgctatttggcgacgaagaattatagtttt 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22459080 gcaagctatgttcttttccacttgtatcattcatttcactaatttgggatttgattttctgaatcttgtatgctatttggcgacgaagaattatagtttt 22459179  T
Q  216 gacaaagttagcaaatccagaaggttgttcctgacaaatcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatcctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22459180 gacaaagttagcaaatccagaaggttgttcctgacaaatcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatcctt 22459279  T
Q  316 gctttgatt 324  Q
    |||||||||    
T  22459280 gctttgatt 22459288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 22481961 - 22482269
Alignment:
Q  16 acatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481961 acatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatat 22482060  T
Q  116 gcaagctatgttcttttccacttgtatcattcatttcacttatttgggatttgattttctgaatcttgtatgctatttggcgacgaagaattatagtttt 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22482061 gcaagctatgttcttttccacttgtatcattcatttcactaatttgggatttgattttctgaatcttgtatgctatttggcgacgaagaattatagtttt 22482160  T
Q  216 gacaaagttagcaaatccagaaggttgttcctgacaaatcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatcctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22482161 gacaaagttagcaaatccagaaggttgttcctgacaaatcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatcctt 22482260  T
Q  316 gctttgatt 324  Q
    |||||||||    
T  22482261 gctttgatt 22482269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 22431704 - 22431852
Alignment:
Q  69 gtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccacttgtatcattcatttcacttatttgggatttg 168  Q
    ||||||||||| |||  ||||  |||  ||| |||| ||||||||||| |||| ||| |||||| |||||||||| || |||||||| ||| ||||||||    
T  22431704 gtttgttgcagaactagttgatgctttatccgaagaagattggatatggaagccatgatctttttcacttgtatcttttatttcactaattcgggatttg 22431803  T
Q  169 attttctgaatcttgtatgctatttggcgacgaagaattatagttttga 217  Q
    || |||||||||||||| ||||||||| ||||||||||  |||||||||    
T  22431804 atgttctgaatcttgtaagctatttggagacgaagaatcttagttttga 22431852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 22631054 - 22631168
Alignment:
Q  101 aagatgattggatatgcaagctatgttcttttccacttgtatcattcatttcacttatttgggatttgattttctgaatcttgtatgctatttggcgacg 200  Q
    |||| |||||||| || |||| ||| |||||| ||||||| || || ||||| || |||||||||||||| |||||||||||||| || |||||| ||||    
T  22631054 aagaagattggatgtggaagccatgatctttttcacttgtttcttttatttctctaatttgggatttgatgttctgaatcttgtaagcaatttggagacg 22631153  T
Q  201 aagaattatagtttt 215  Q
    ||||||  |||||||    
T  22631154 aagaatcttagtttt 22631168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 22358625 - 22358689
Alignment:
Q  136 cttgtatcattcatttcacttatttgggatttgattttctgaatcttgtatgctatttggcgacg 200  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||| ||||    
T  22358625 cttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacg 22358689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 22636126 - 22636190
Alignment:
Q  136 cttgtatcattcatttcacttatttgggatttgattttctgaatcttgtatgctatttggcgacg 200  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||| ||||    
T  22636126 cttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacg 22636190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 22437395 - 22437463
Alignment:
Q  256 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgatt 324  Q
    ||||| ||||||||||||||||  ||| |||||||||||||||| |||| ||| |||||||||||||||    
T  22437395 atataatcatcaatgacatcttctatgtcaaaagatgcttctattagcttcttcatccttgctttgatt 22437463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 22431909 - 22431979
Alignment:
Q  256 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgatttc 326  Q
    ||||| ||||||||||||||||  |||  ||||||||||||||| ||||| |||||| |||||||||||||    
T  22431909 atataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatttc 22431979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 22207733 - 22207648
Alignment:
Q  239 gttgttcctgacaaatcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgatt 324  Q
    ||||| ||| ||| |||||||||||||||||||||||||| ||   ||||||||||||| | |||||  ||||| |||||||||||    
T  22207733 gttgtccctcacatatcatatattcatcaatgacatcttgtatctgaaaagatgcttctctcagctgtctgatctttgctttgatt 22207648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 22632626 - 22632695
Alignment:
Q  256 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattt 325  Q
    ||||| |||||||||||||||| ||||  ||||||||||||||| |||||||||||| |  |||||||||    
T  22632626 atataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgatcatgtctttgattt 22632695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 22636267 - 22636336
Alignment:
Q  256 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattt 325  Q
    ||||| |||||||||||||||| ||||  ||||||||||||||| |||||||||||| |  |||||||||    
T  22636267 atataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgatcatgtctttgattt 22636336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 22632450 - 22632564
Alignment:
Q  101 aagatgattggatatgcaagctatgttcttttccacttgtatcattcatttcacttatttgggatttgattttctgaatcttgtatgctatttggcgacg 200  Q
    |||| |||||||| || |||| ||| |||||| ||||||| || || ||||| || |||  ||||||||| |||||||||||||  || |||||| ||||    
T  22632450 aagaagattggatgtggaagccatgatctttttcacttgtttcttttatttctctaattctggatttgatgttctgaatcttgtcagcaatttggagacg 22632549  T
Q  201 aagaattatagtttt 215  Q
    ||||||  |||||||    
T  22632550 aagaatcttagtttt 22632564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 22358766 - 22358835
Alignment:
Q  256 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattt 325  Q
    ||||| ||||||||||||||||  |||  ||||||||||||||| |||||||||||| |  |||||||||    
T  22358766 atataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgcttgatcatgtctttgattt 22358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 22468533 - 22468635
Alignment:
Q  101 aagatgattggatatgcaagctatgttcttttccacttgtatcattcatttcacttatttgggatttgattttctgaatcttgtatgctatttggcgacg 200  Q
    |||| |||||||| |  |||| ||| |||||| ||||||| || || ||||| || ||| |||| ||||| |||||||||||||| | ||||||| ||||    
T  22468533 aagaagattggatgttgaagccatgatcttttgcacttgtttcttttatttctctgattcgggacttgatgttctgaatcttgtaagttatttggagacg 22468632  T
Q  201 aag 203  Q
    |||    
T  22468633 aag 22468635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 2748729 - 2748680
Alignment:
Q  259 tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt 308  Q
    ||||||||||||||||||| ||||| ||| ||||||||| | ||||||||    
T  2748729 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2748680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 2768800 - 2768751
Alignment:
Q  259 tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt 308  Q
    ||||||||||||||||||| ||||| ||| ||||||||| | ||||||||    
T  2768800 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 2839007 - 2839056
Alignment:
Q  259 tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt 308  Q
    ||||||||||||||||||| ||||| ||| ||||||||| | ||||||||    
T  2839007 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2839056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 2856217 - 2856266
Alignment:
Q  259 tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt 308  Q
    ||||||||||||||||||| ||||| ||| ||||||||| | ||||||||    
T  2856217 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2856266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 22443500 - 22443569
Alignment:
Q  256 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattt 325  Q
    ||||| ||||||||||||||||  ||   ||||||||||||||| | ||| |||||| ||||||||||||    
T  22443500 atataatcatcaatgacatcttctatatgaaaagatgcttctatcaactgtttgatcattgctttgattt 22443569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 22631230 - 22631299
Alignment:
Q  256 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattt 325  Q
    ||||| ||||||||||||||||  |||   |||||||||||||| |||||||||||| |  |||||||||    
T  22631230 atataatcatcaatgacatcttccatgtggaaagatgcttctatcagctgcttgatcatgtctttgattt 22631299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 22368465 - 22368613
Alignment:
Q  69 gtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccacttgtatcattcatttcacttatttgggatttg 168  Q
    ||||||||||| ||| |||||  |||  |||||||| |||||||| |  |||  ||| || ||| ||||||| || || ||||| || |||||||| |||    
T  22368465 gtttgttgcagaactacttgatgctttatccaaagaagattggatgtcgaagtcatgatccttttcacttgtttcttttatttccctaatttgggaattg 22368564  T
Q  169 attttctgaatcttgtatgctatttggcgacgaagaattatagttttga 217  Q
    || ||||||||||| || || |||||| |||| ||  || |||||||||    
T  22368565 atgttctgaatcttataagcaatttggagacgtagttttgtagttttga 22368613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University