View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18743_high_32 (Length: 274)

Name: NF18743_high_32
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18743_high_32
NF18743_high_32
[»] chr6 (67 HSPs)
chr6 (17-257)||(25579766-25580006)
chr6 (25-257)||(26055981-26056213)
chr6 (25-257)||(26075951-26076183)
chr6 (17-257)||(26142912-26143152)
chr6 (17-257)||(25538587-25538827)
chr6 (17-210)||(26048892-26049085)
chr6 (17-210)||(26070061-26070254)
chr6 (17-257)||(25481789-25482029)
chr6 (17-239)||(26656036-26656258)
chr6 (17-239)||(26762007-26762229)
chr6 (24-242)||(27337980-27338198)
chr6 (24-242)||(27398720-27398938)
chr6 (17-257)||(26646526-26646766)
chr6 (17-257)||(26752494-26752734)
chr6 (17-158)||(27427605-27427746)
chr6 (24-242)||(26823894-26824112)
chr6 (24-187)||(26623030-26623193)
chr6 (24-187)||(26729008-26729171)
chr6 (17-112)||(26884210-26884307)
chr6 (24-158)||(27679000-27679134)
chr6 (18-242)||(27718294-27718518)
chr6 (24-158)||(27677613-27677747)
chr6 (18-112)||(27698539-27698633)
chr6 (18-242)||(27610917-27611141)
chr6 (19-107)||(27531247-27531335)
chr6 (24-112)||(27706447-27706535)
chr6 (18-190)||(27724812-27724984)
chr6 (25-85)||(27229287-27229347)
chr6 (54-244)||(26949745-26949935)
chr6 (24-102)||(31284342-31284420)
chr6 (21-146)||(28149988-28150113)
chr6 (24-112)||(27593065-27593153)
chr6 (18-160)||(27604702-27604844)
chr6 (50-172)||(28139621-28139743)
chr6 (54-188)||(28242888-28243022)
chr6 (51-229)||(28098297-28098475)
chr6 (51-257)||(26848741-26848947)
chr6 (21-190)||(26341898-26342070)
chr6 (24-110)||(28181168-28181254)
chr6 (24-110)||(28297760-28297846)
chr6 (24-110)||(28514227-28514313)
chr6 (51-99)||(2184369-2184417)
chr6 (52-100)||(26975134-26975182)
chr6 (52-102)||(25071741-25071791)
chr6 (42-104)||(26861688-26861750)
chr6 (50-112)||(26937174-26937236)
chr6 (24-110)||(28185420-28185506)
chr6 (17-110)||(28226997-28227090)
chr6 (52-99)||(2184980-2185027)
chr6 (51-110)||(27214498-27214557)
chr6 (51-110)||(27234671-27234730)
chr6 (54-98)||(28234648-28234692)
chr6 (17-112)||(28781186-28781281)
chr6 (180-242)||(25506899-25506961)
chr6 (51-105)||(27665169-27665223)
chr6 (199-244)||(25071888-25071933)
chr6 (199-244)||(27214649-27214694)
chr6 (199-244)||(27234534-27234579)
chr6 (24-105)||(28325535-28325616)
chr6 (54-105)||(26635774-26635825)
chr6 (54-105)||(26741740-26741791)
chr6 (17-112)||(26802489-26802584)
chr6 (54-100)||(26959250-26959296)
chr6 (180-241)||(24715795-24715856)
chr6 (68-112)||(28786376-28786420)
chr6 (68-112)||(28792497-28792541)
chr6 (136-188)||(29826193-29826245)
[»] chr1 (3 HSPs)
chr1 (24-257)||(268244-268477)
chr1 (17-245)||(28127578-28127806)
chr1 (50-245)||(28164262-28164456)
[»] chr4 (8 HSPs)
chr4 (50-257)||(18731391-18731598)
chr4 (50-257)||(18699287-18699494)
chr4 (50-257)||(18679454-18679661)
chr4 (50-257)||(18723972-18724179)
chr4 (24-257)||(18655364-18655597)
chr4 (17-158)||(18073809-18073950)
chr4 (17-109)||(17989088-17989180)
chr4 (52-190)||(5090921-5091059)
[»] chr8 (1 HSPs)
chr8 (27-241)||(29273686-29273900)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-158)||(59617-59758)
[»] scaffold0349 (2 HSPs)
scaffold0349 (18-112)||(3466-3561)
scaffold0349 (18-190)||(14323-14494)
[»] scaffold0038 (4 HSPs)
scaffold0038 (54-188)||(43050-43184)
scaffold0038 (54-110)||(34809-34865)
scaffold0038 (17-110)||(27495-27588)
scaffold0038 (24-105)||(116850-116931)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-242)||(4586-4810)
scaffold0277 (17-112)||(13677-13772)
[»] scaffold0019 (1 HSPs)
scaffold0019 (24-105)||(58334-58415)
[»] chr2 (4 HSPs)
chr2 (52-105)||(17993736-17993789)
chr2 (21-105)||(3279739-3279823)
chr2 (165-244)||(17993597-17993676)
chr2 (136-187)||(3279857-3279908)
[»] scaffold0419 (1 HSPs)
scaffold0419 (17-112)||(7572-7667)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 67)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 25579766 - 25580006
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  25579766 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25579865  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  25579866 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagtatcttactaagcatgaagagaggt 25579965  T
Q  217 tccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    | ||||||||| ||||||||||||||||| |||||||||||    
T  25579966 ttcaaaataacgagaaaaacatggagcgattgcgtcaatgg 25580006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 26055981 - 26056213
Alignment:
Q  25 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgctt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  26055981 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttgctt 26056080  T
Q  125 agtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26056081 agtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaaaat 26056180  T
Q  225 aacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    ||| ||||||||||||||||| |||||||||||    
T  26056181 aacgagaaaaacatggagcgattgcgtcaatgg 26056213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 26075951 - 26076183
Alignment:
Q  25 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgctt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  26075951 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttgctt 26076050  T
Q  125 agtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26076051 agtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaaaat 26076150  T
Q  225 aacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    ||| ||||||||||||||||| |||||||||||    
T  26076151 aacgagaaaaacatggagcgattgcgtcaatgg 26076183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 26142912 - 26143152
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  26142912 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26143011  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||    
T  26143012 agttgcttagtatttcccgttttctatgatgtggaacctactcacatacgaaatcagagtgggatttatggtgagcatcttactaagcatgaagagaggt 26143111  T
Q  217 tccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    | ||||||||| ||||||||||||||||| |||||||||||    
T  26143112 ttcaaaataacgagaaaaacatggagcgattgcgtcaatgg 26143152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 25538587 - 25538827
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |    
T  25538587 agaatctagaatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccagatcattcactgctacaagacaaag 25538686  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  25538687 agttgcttagtattgcccgttttctatgatgtggaacctactcagttacgacatcagagtgggagttatggtgagcattttactaagcatgaagagaggt 25538786  T
Q  217 tccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    | ||||||||  ||||||||||||||||| |||||||||||    
T  25538787 ttcaaaataatgagaaaaacatggagcgattgcgtcaatgg 25538827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 26048892 - 26049085
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  26048892 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26048991  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaag 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  26048992 agttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaagcatgaag 26049085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 26070061 - 26070254
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  26070061 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26070160  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaag 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  26070161 agttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaagcatgaag 26070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 25481789 - 25482029
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  25481789 agaatctaggatttgtattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25481888  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
    |||||||||||||| ||||||||||||| |||||| |||||| |  | |||| ||| |   | |||||||||||  |||| |||||||||||||||||||    
T  25481889 agttgcttagtattacccgttttctatggtgtggatcctactgatgttcgacgtcatacatgtagttatggtgaatatctgactaagcatgaagaggggt 25481988  T
Q  217 tccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  25481989 tccaaaataacgagaaaaacatggagcgattgcgtcaatgg 25482029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 26656036 - 26656258
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |    
T  26656036 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaag 26656135  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
     |||| |  || ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||  ||    
T  26656136 ggttgttcggttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagt 26656235  T
Q  217 tccaaaataacaagaaaaacatg 239  Q
    |||||||||||||| ||||||||    
T  26656236 tccaaaataacaaggaaaacatg 26656258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 26762007 - 26762229
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |    
T  26762007 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaag 26762106  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
     |||| |  || ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||  ||    
T  26762107 ggttgttcggttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagt 26762206  T
Q  217 tccaaaataacaagaaaaacatg 239  Q
    |||||||||||||| ||||||||    
T  26762207 tccaaaataacaaggaaaacatg 26762229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 27338198 - 27337980
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||| |    
T  27338198 aggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgtt 27338099  T
Q  124 tagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaa 223  Q
      || ||||| |||||||||| || ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||    
T  27338098 cggttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaa 27337999  T
Q  224 taacaagaaaaacatggag 242  Q
    ||||||| |||||||||||    
T  27337998 taacaaggaaaacatggag 27337980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 27398938 - 27398720
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||| |    
T  27398938 aggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgtt 27398839  T
Q  124 tagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaa 223  Q
      || ||||| |||||||||| || ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||    
T  27398838 cggttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaa 27398739  T
Q  224 taacaagaaaaacatggag 242  Q
    ||||||| |||||||||||    
T  27398738 taacaaggaaaacatggag 27398720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 26646526 - 26646766
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| ||||||||||||||  | ||||||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||| | |    
T  26646526 agaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaag 26646625  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
     || |  | || ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||| | |    
T  26646626 ggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtt 26646725  T
Q  217 tccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    ||||||||||||||||||||| ||| ||| ||| |||||||    
T  26646726 tccaaaataacaagaaaaacaaggaacgattgcatcaatgg 26646766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 26752494 - 26752734
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| ||||||||||||||  | ||||||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||| | |    
T  26752494 agaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaag 26752593  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
     || |  | || ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||| | |    
T  26752594 ggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtt 26752693  T
Q  217 tccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    ||||||||||||||||||||| ||| ||| ||| |||||||    
T  26752694 tccaaaataacaagaaaaacaaggaacgattgcatcaatgg 26752734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 27427746 - 27427605
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || | |    
T  27427746 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaag 27427647  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctact 158  Q
     ||||| | || ||||| ||||||| || |||||||||||||    
T  27427646 ggttgcctcgttttgcctgttttctttggtgtggaacctact 27427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 26823894 - 26824112
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |  |||||||   | | |  ||     
T  26823894 aggatttttattcctgtgttttctgccaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcgcgtctacaaggaaaaggggcgcc 26823993  T
Q  124 tagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaa 223  Q
    | || ||||| |||||||||| |||||| |||  | |||||||||||||| |||||||||||| |   ||||| |||||||||||| || |||||  |||    
T  26823994 tcgttttgcctgttttctatggtgtggatcctggtgacatacgacatcagcgtgggagttatgctatacatctcactaagcatgaaaagaggttcggaaa 26824093  T
Q  224 taacaagaaaaacatggag 242  Q
    ||||||| |||||||||||    
T  26824094 taacaaggaaaacatggag 26824112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 26623030 - 26623193
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    ||||||||||||||  | |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || | | || |      
T  26623030 aggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtc 26623129  T
Q  124 tagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 187  Q
    | || |||||||| |||||||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26623130 tcgttttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26623193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 26729008 - 26729171
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    ||||||||||||||  | |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || | | || |      
T  26729008 aggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtc 26729107  T
Q  124 tagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 187  Q
    | || |||||||| |||||||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26729108 tcgttttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26729171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 26884210 - 26884307
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccaca--tcattcactgctacaagac 112  Q
    |||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  26884210 agaatctagaatttttattccaatattttctaccaactatgcatcttcttcattttgtttggacgaacttgtccacatgtcattcactgctacgagac 26884307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 27679000 - 27679134
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    ||||||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||     
T  27679000 aggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcc 27679099  T
Q  124 tagtattgcccgttttctatgatgtggaacctact 158  Q
    | ||  |||| ||||||| || |||||||||||||    
T  27679100 tcgttctgcctgttttctttggtgtggaacctact 27679134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 27718518 - 27718294
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacga 117  Q
    ||||| ||||||||||||||  | ||||||  ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |     
T  27718518 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 27718419  T
Q  118 gttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcatgaagaggggt 216  Q
    || || | || ||||| |||||||  |  |||||||||||| || | ||||||||||  || |||||||||| ||||| |  || |||||||| || |||    
T  27718418 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcat-tggctgagcatgaaaagaggt 27718320  T
Q  217 tccaaaataacaagaaaaacatggag 242  Q
    | |||||| | ||||| |||||||||    
T  27718319 ttcaaaatgataagaataacatggag 27718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 27677747 - 27677613
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    |||||||||||| |  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||     
T  27677747 aggatttttattgctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcc 27677648  T
Q  124 tagtattgcccgttttctatgatgtggaacctact 158  Q
    | ||  |||| ||||||| || |||||||||||||    
T  27677647 tcgttctgcctgttttctttgctgtggaacctact 27677613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 27698633 - 27698539
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    ||||| ||||||||||||||  | ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  27698633 gaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcattttgtttggacgaacttgtccacataattcactgctacgagac 27698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 27611141 - 27610917
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacga 117  Q
    ||||| ||||||||||||||  | ||||||  ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |     
T  27611141 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 27611042  T
Q  118 gttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcatgaagaggggt 216  Q
    || || | || ||||| |||||||  |  |||||||||||| |  | ||||||||||  || |||||||||| ||||| |  || |||||||| || |||    
T  27611041 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaaagtgcgacatcagaaaggtagttatggtgaagcat-tggctgagcatgaaaagaggt 27610943  T
Q  217 tccaaaataacaagaaaaacatggag 242  Q
    | |||||| | ||||| |||||||||    
T  27610942 ttcaaaatgataagaataacatggag 27610917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 27531335 - 27531247
Alignment:
Q  19 aatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctac 107  Q
    |||| ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  27531335 aatctaggatttttattcccgtattttctgaaaactatgcatcttcttcattttgtttggacgaacttgttcacatcactcattgctac 27531247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 27706535 - 27706447
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    ||||||||||||||  | ||||||  || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27706535 aggatttttattcctgtgttttctatcacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 27706447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 27724984 - 27724812
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacga 117  Q
    ||||| ||||||||||||||  | ||||||  ||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| | |     
T  27724984 gaatctaggatttttattcctgtgttttctatcaactatgcctattcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 27724885  T
Q  118 gttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 190  Q
    || || | || ||||| |||||||  |  |||||||||||| || | ||||||||||  || |||||||||||    
T  27724884 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtga 27724812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 27229287 - 27229347
Alignment:
Q  25 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27229287 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgaacgaact 27229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 244
Target Start/End: Original strand, 26949745 - 26949935
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaac 153  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||||| || ||||   |   || || | ||  |||| |||||||||||||| ||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattcactacttcaaggaaaaaggtcgccttgttctgccagttttctatgatgtagaac 26949844  T
Q  154 ctactcacatacgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 244  Q
    || ||||| | |||||||||| |   ||||||||||| ||| ||| |||||||||||||| |||||||||| | ||| ||||||||||||||    
T  26949845 cttctcacgtgcgacatcagaattatagttatggtgaagca-cttgctaagcatgaagagaggttccaaaagagcaaaaaaaacatggagcg 26949935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 31284342 - 31284420
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcact 102  Q
    ||||||||||| ||| | ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  31284342 aggatttttatccccgtgttttctgccaactatgcctcttcgtcgttttgtttggacgaacttgtccacatcattcact 31284420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 28149988 - 28150113
Alignment:
Q  21 tccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagtt 120  Q
    ||||||||||| ||||| || || |||  ||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||| | | | |||    
T  28149988 tccaggattttcattccaatcttctctatcaactatacttcttcttcattttgtttggacgaacttgtccacattattcactgcttcaaggcaaagggtt 28150087  T
Q  121 gcttagtattgcccgttttctatgat 146  Q
    |||||||  ||||  |||||||||||    
T  28150088 gcttagttctgcctattttctatgat 28150113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 27593153 - 27593065
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    ||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  27593153 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagac 27593065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 27604844 - 27604702
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacga 117  Q
    ||||||||||||||||||||  | ||||||  ||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||| | |     
T  27604844 gaatccaggatttttattcctgtgttttctatcaaatatgcctcttcttccttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 27604745  T
Q  118 gttgcttagtattgcccgttttctatgatgtggaacctactca 160  Q
    || || | || ||||| ||||||| || |||||||||| ||||    
T  27604744 gtcgcgtcgttttgcctgttttctttggtgtggaaccttctca 27604702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 28139621 - 28139743
Alignment:
Q  50 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 149  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||| ||| || | | | || || || ||||| |||||||||| ||||    
T  28139621 caactatgcctcttcttcgttttgcttggacgaacttgtccacatcattgactgcttcaacacaaagggatgtttggttttgcctgttttctatggtgtg 28139720  T
Q  150 gaacctactcacatacgacatca 172  Q
    || ||| ||||||| ||||||||    
T  28139721 gatccttctcacattcgacatca 28139743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 28242888 - 28243022
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaac 153  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||  |   |  || |||| |||||  ||||||||||||||||||    
T  28242888 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaac 28242987  T
Q  154 ctactcacatacgacatcagagtgggagttatggt 188  Q
    || || || |  ||||||||| ||| |||||||||    
T  28242988 cttctaacgtgagacatcagattggcagttatggt 28243022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 28098475 - 28098297
Alignment:
Q  51 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctac-aagacgacgagttgcttagtattgcccgttttctatgatgtg 149  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||| | ||| ||||  | | ||||||| || || ||  |||| | ||| |||    
T  28098475 aactatgcttcttctttgttttgtttggatgaacttgtccacatcattcaccgttacgaagaaaagg-gttgcttcgtttttcctattttttgtgacgtg 28098377  T
Q  150 gaacctactcacatacgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaa 229  Q
    |||||| ||||| | ||||||||||  |||||||||||||| |||| |  |||||||||||||| ||||||||||||||||    
T  28098376 gaaccttctcacgtgcgacatcagacggggagttatggtgaagcat-tagctaagcatgaagagaggttccaaaataacaa 28098297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 257
Target Start/End: Original strand, 26848741 - 26848947
Alignment:
Q  51 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtgg 150  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||| |||| ||||   | | || || | ||  | || ||||||||||   | |    
T  26848741 aactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaaggaaaagggtagcatggttattcctgttttctatggcatag 26848840  T
Q  151 aacctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgc 249  Q
    ||||| ||||  | |||||||||| | | |||||||||| |||| ||| ||||||||||||||| ||| |||||||||||| ||| |||||||||  |||    
T  26848841 aaccttctcatgtgcgacatcagaatagtagttatggtgaagca-cttgctaagcatgaagaggtgtttcaaaataacaaggaaagcatggagcgtttgc 26848939  T
Q  250 gtcaatgg 257  Q
    || |||||    
T  26848940 gtaaatgg 26848947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 26342070 - 26341898
Alignment:
Q  21 tccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag---acgacga 117  Q
    ||||||||||| ||||| || || ||   ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||   | || |     
T  26342070 tccaggattttcattccaattttctcaatcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaagaagg 26341971  T
Q  118 gttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 190  Q
    || ||  | | ||||| |||||||||||  |||||||| ||||  |||||| ||||| ||||||||| |||||    
T  26341970 gtcgcaaaattttgcctgttttctatgacatggaaccttctcatgtacgacgtcagattgggagttacggtga 26341898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 28181168 - 28181254
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    |||||||| |||||| | || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  28181168 aggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28181254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 28297846 - 28297760
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    |||||||| |||||  | || ||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  28297846 aggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28297760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 28514227 - 28514313
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    |||||||| |||||  | || ||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  28514227 aggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28514313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 2184369 - 2184417
Alignment:
Q  51 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattc 99  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2184369 aactatgcttcttcttcattttgtttggacgaacttgtccacatcattc 2184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 26975134 - 26975182
Alignment:
Q  52 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26975134 actatgcttcttcttcattttgtttggacgaacttgtccacatcattca 26975182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 25071741 - 25071791
Alignment:
Q  52 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcact 102  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  25071741 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcact 25071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 26861688 - 26861750
Alignment:
Q  42 ttttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgc 104  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||| |||||    
T  26861688 ttttctgccaactatgcctcttcgtcattttgtttggatgaacttgtccaaatcattaactgc 26861750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 26937174 - 26937236
Alignment:
Q  50 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  26937174 caactatgccacttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagac 26937236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 28185420 - 28185506
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    |||||||| |||||| | || |||  ||| ||||| |||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  28185420 aggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattaactgcttcaag 28185506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 28226997 - 28227090
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    |||||| |||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  28226997 agaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaag 28227090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 2184980 - 2185027
Alignment:
Q  52 actatgcatcttcttcattttgtttggacgaacttgtccacatcattc 99  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  2184980 actatgcttcttcttcattttgtttggacgaacttgtccatatcattc 2185027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 27214498 - 27214557
Alignment:
Q  51 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27214557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 27234730 - 27234671
Alignment:
Q  51 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27234671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 28234648 - 28234692
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcatt 98  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  28234648 tatgcttcttcttcattttgcttggacgaacttgtccacatcatt 28234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 28781186 - 28781281
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    |||||| ||||||||||||||  | ||||||  |||||||||  ||||   |||||| |||||||||||||| ||||| ||||| |||||||||||    
T  28781186 agaatctaggatttttattcctgtgttttctatcaactatgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagac 28781281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 25506961 - 25506899
Alignment:
Q  180 agttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 242  Q
    |||||||||||  |||| |||||||||||||||  ||| |||||||| |||||||||||||||    
T  25506961 agttatggtgaagatctgactaagcatgaagagaagtttcaaaataataagaaaaacatggag 25506899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 27665223 - 27665169
Alignment:
Q  51 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    ||||||||  |||||||||||||||| || |||||||||||||||||||| ||||    
T  27665223 aactatgctacttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 25071888 - 25071933
Alignment:
Q  199 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 244  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||    
T  25071888 ctaagcatgaagaggggtttcaaaataacaaggaacacatggagcg 25071933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 27214649 - 27214694
Alignment:
Q  199 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 244  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||    
T  27214649 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcg 27214694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 27234579 - 27234534
Alignment:
Q  199 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 244  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||    
T  27234579 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcg 27234534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 28325535 - 28325616
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    |||||||| ||||| || || |||  ||| ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  28325535 aggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgct 28325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 26635774 - 26635825
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 26741740 - 26741791
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 26802489 - 26802584
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    |||||| || |||||||||||  | ||||||  ||||||||| |||||   |||||| |||||||||||||| ||||| ||||| ||||| |||||    
T  26802489 agaatctagaatttttattcctgtgttttctatcaactatgcctcttcaaaattttgcttggacgaacttgttcacattattcattgctataagac 26802584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 26959250 - 26959296
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcattca 100  Q
    ||||| |||||||| |||| |||||| ||||||||||||||||||||    
T  26959250 tatgcttcttcttcgttttatttggatgaacttgtccacatcattca 26959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 24715795 - 24715856
Alignment:
Q  180 agttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatgga 241  Q
    |||||||||||   |||| ||||||||||||| ||||| |||||||||||| || |||||||    
T  24715795 agttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatgga 24715856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 28786376 - 28786420
Alignment:
Q  68 attttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    |||||| |||||||||||||| ||||| ||||| |||||||||||    
T  28786376 attttgcttggacgaacttgttcacattattcattgctacaagac 28786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 28792497 - 28792541
Alignment:
Q  68 attttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    |||||| |||||||||||||| ||||| ||||| |||||||||||    
T  28792497 attttgcttggacgaacttgttcacattattcattgctacaagac 28792541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 29826193 - 29826245
Alignment:
Q  136 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 188  Q
    |||||||||||||||| ||| ||||  | |||||||||| |||||||||||||    
T  29826193 ttttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 29826245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 268477 - 268244
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    ||||||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  | | || |      
T  268477 aggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagaaaaagggtcgtc 268378  T
Q  124 tagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaa 223  Q
    |  | |||||||| |||||||  ||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||| | ||||||||    
T  268377 tcattttgcccgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtttccaaaa 268278  T
Q  224 taacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    || ||||||||||||||||||  ||| |||||||    
T  268277 tagcaagaaaaacatggagcggttgcatcaatgg 268244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 28127806 - 28127578
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    |||||| || |||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |    
T  28127806 agaatctagaatttttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaacttgtgcacatcattcactgctacaagacaaag 28127707  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggt 216  Q
     || || |||| ||||| ||||||| ||  ||||| |||||| |  | ||| |||| |  ||||||||||||||  | ||| ||||||||| |||| |||    
T  28127706 ggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagttatggtgaagagcttgctaagcatggagagaggt 28127607  T
Q  217 tccaaaataacaagaaaaacatggagcga 245  Q
    |||||||||||||||||||||||||||||    
T  28127606 tccaaaataacaagaaaaacatggagcga 28127578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 28164456 - 28164262
Alignment:
Q  50 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 149  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || || |||| ||||| ||||||| ||  |||    
T  28164456 caactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttct-tggcgtg 28164358  T
Q  150 gaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcga 245  Q
    || |||||| |  | |||||||| |  |||||||||||  |  |||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  28164357 gatcctactgatgtgcgacatcatacagggagttatggcaaagatcttactaagcatggtgagaggttccaaaataacaagaaaaacatggagcga 28164262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 257
Target Start/End: Complemental strand, 18731598 - 18731391
Alignment:
Q  50 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 149  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | | || |  | || ||||| ||||||||||  |||    
T  18731598 caactatgcctcttcttcattttgtttggacgaacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtg 18731499  T
Q  150 gaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgc 249  Q
    || |||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||  || || | |||||||||||||||||||||||||||||  |||    
T  18731498 gatcctagtcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacaaaaagagtttccaaaataacaagaaaaacatggagcggttgc 18731399  T
Q  250 gtcaatgg 257  Q
     |||||||    
T  18731398 atcaatgg 18731391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 50 - 257
Target Start/End: Complemental strand, 18699494 - 18699287
Alignment:
Q  50 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 149  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   || |  | || ||||| ||||||||||  ||     
T  18699494 caactatgcctcttcttcattttgtttggacgaacttgttcacatcattcactgctacaagacaaaaggtcgtctcgttttgcctgttttctatggcgta 18699395  T
Q  150 gaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgc 249  Q
    || |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | | || | |||||||||||||||||||||||||||||  |||    
T  18699394 gatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacggaaagagtttccaaaataacaagaaaaacatggagcggttgc 18699295  T
Q  250 gtcaatgg 257  Q
     |||||||    
T  18699294 atcaatgg 18699287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 50 - 257
Target Start/End: Complemental strand, 18679661 - 18679454
Alignment:
Q  50 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 149  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |  | || ||||| ||||||||||  |||    
T  18679661 caactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgtcttgttttgcctgttttctatgtcgtg 18679562  T
Q  150 gaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagca-tgaagaggggttccaaaataacaagaaaaacatggagcgagtg 248  Q
    || |||||||||||| ||||||| ||||| ||||||||||| ||||| ||||| || |||| || | |||||||||||||| ||||||||||||||  ||    
T  18679561 gatcctactcacatatgacatcaaagtggtagttatggtgaacatctcactaatcactgaa-agagtttccaaaataacaataaaaacatggagcggttg 18679463  T
Q  249 cgtcaatgg 257  Q
    | |||||||    
T  18679462 catcaatgg 18679454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 50 - 257
Target Start/End: Complemental strand, 18724179 - 18723972
Alignment:
Q  50 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 149  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| | | || |  | || ||||| ||||||||||  |||    
T  18724179 caactatgcctcttcttcattttgtttgaacgaacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtg 18724080  T
Q  150 gaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgc 249  Q
    || |||| |||||||||||| || ||||||||||||||||| ||||| ||||||||  ||  | | |||||||||||||||||||||||||||||  |||    
T  18724079 gatcctagtcacatacgacaccaaagtgggagttatggtgaacatctcactaagcacaaaatgagtttccaaaataacaagaaaaacatggagcggttgc 18723980  T
Q  250 gtcaatgg 257  Q
     |||||||    
T  18723979 atcaatgg 18723972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 18655597 - 18655364
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgct 123  Q
    ||||| ||||||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | || |      
T  18655597 aggatctttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccgcatcattcactgctacaagacaaagggtcgtc 18655498  T
Q  124 tagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaa 223  Q
    | || || || ||||||||||  ||||| |||||||||||||||||||| | ||| ||||||||||| ||||| ||||||||   | ||   ||||||||    
T  18655497 tcgtttttcctgttttctatggcgtggatcctactcacatacgacatcaaactggaagttatggtgaacatctcactaagcacagaaagaatttccaaaa 18655398  T
Q  224 taacaagaaaaacatggagcgagtgcgtcaatgg 257  Q
    |||||||||||||||||||||  ||| |||||||    
T  18655397 taacaagaaaaacatggagcggttgcatcaatgg 18655364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 18073809 - 18073950
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || | |    
T  18073809 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaag 18073908  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctact 158  Q
     ||||| | || ||||| ||||||| || |||||||||||||    
T  18073909 ggttgcctcgttttgcctgttttctttggtgtggaacctact 18073950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 17989180 - 17989088
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaa 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  17989180 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaa 17989088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 5091059 - 5090921
Alignment:
Q  52 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtgga 151  Q
    ||||||| |||||||| |||||||| || ||||||||||| || |||||||||| ||||   |   ||||| | || |||||  ||||||||| ||||||    
T  5091059 actatgcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtgga 5090960  T
Q  152 acctactcacatacgacatcagagtgggagttatggtga 190  Q
    |||| ||||  | ||| |||||| ||| |||||||||||    
T  5090959 accttctcatgtgcgatatcagactggaagttatggtga 5090921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 29273900 - 29273686
Alignment:
Q  27 atttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttag 126  Q
    |||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |  |      
T  29273900 atttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgtctca 29273801  T
Q  127 tattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataa 226  Q
    | ||||| || |||||||  ||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||| | |||||| | ||||||||||     
T  29273800 ttttgcctgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagtacgaagagagtttccaaaatag 29273701  T
Q  227 caagaaaaacatgga 241  Q
    |||||||||||||||    
T  29273700 caagaaaaacatgga 29273686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 59617 - 59758
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacg 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || | |    
T  59617 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaag 59716  T
Q  117 agttgcttagtattgcccgttttctatgatgtggaacctact 158  Q
     ||||| | || ||||| ||||||| || |||||||||||||    
T  59717 ggttgcctcgttttgcctgttttctttggtgtggaacctact 59758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 3561 - 3466
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaac-tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    ||||| ||||||||||||||  | ||||||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3561 gaatctaggatttttattcctgtgttttctatcaacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 3466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 14494 - 14323
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacga 117  Q
    ||||| ||||||||||||||  | ||||||  ||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| | |     
T  14494 gaatctaggatttttattcctgtgttttctatcaactatgcct-ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 14396  T
Q  118 gttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 190  Q
    || || | || ||||| |||||||  |  |||||||||||| || | ||||||||||  || |||||||||||    
T  14395 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtga 14323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 43050 - 43184
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaac 153  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||  |   |  || |||| |||||  ||||||||||||||||||    
T  43050 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaac 43149  T
Q  154 ctactcacatacgacatcagagtgggagttatggt 188  Q
    || || || |  ||||||||| ||| |||||||||    
T  43150 cttctaacgtgagacatcagattggcagttatggt 43184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 34809 - 34865
Alignment:
Q  54 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  34809 tatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 34865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 27495 - 27588
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 110  Q
    |||||| |||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  27495 agaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaag 27588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 116850 - 116931
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    |||||||| ||||| || || |||  ||| ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  116850 aggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgct 116931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 4810 - 4586
Alignment:
Q  18 gaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacga 117  Q
    ||||| ||||||||||||||  | ||||||  |  |||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| | |     
T  4810 gaatctaggatttttattcctgtgttttctatcttctatgccttttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 4711  T
Q  118 gttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcatgaagaggggt 216  Q
    || || | || ||||| |||||||  |  |||||||||||| || | ||||||| ||  || |||||||||| ||||| |  || |||||||| || |||    
T  4710 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcat-tggctgagcatgaaaagaggt 4612  T
Q  217 tccaaaataacaagaaaaacatggag 242  Q
    | |||||| | ||||| |||||||||    
T  4611 ttcaaaatgataagaataacatggag 4586  T

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Target: scaffold0277; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 13772 - 13677
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    |||||| ||||||||||||||  | ||||||  |||||| ||  ||||   |||||| |||||||||||||| ||||| ||||| |||||||||||    
T  13772 agaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagac 13677  T

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Target: scaffold0019 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 58415 - 58334
Alignment:
Q  24 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    |||||||| |||||| | || |||  ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  58415 aggattttcattcccgtcttgtctatcaactatgcttcttcttcattttgcttgaacgaacttgtccacatcattcactgct 58334  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 17993789 - 17993736
Alignment:
Q  52 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcaatgct 17993736  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 3279739 - 3279823
Alignment:
Q  21 tccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 105  Q
    |||| ||||||||||||  | || |||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||    
T  3279739 tccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcattgct 3279823  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 17993676 - 17993597
Alignment:
Q  165 cgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 244  Q
    |||||||||| ||  ||||||||||| ||| ||| |||||||||||||||| || ||||||| |||| |||||||||||||    
T  17993676 cgacatcagaatgatagttatggtgaagca-cttgctaagcatgaagagggttttcaaaatagcaaggaaaacatggagcg 17993597  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 3279857 - 3279908
Alignment:
Q  136 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 187  Q
    |||||||||||||||||||| | ||| | |||||||||| ||||||||||||    
T  3279857 ttttctatgatgtggaaccttcccacgtgcgacatcagactgggagttatgg 3279908  T

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Target: scaffold0419 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 7572 - 7667
Alignment:
Q  17 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 112  Q
    |||||| ||||||||||||||  | ||||||  |||||| ||  ||||   |||||| |||||||||||||| ||||| ||||| |||||||||||    
T  7572 agaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagac 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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