View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_high_4 (Length: 696)
Name: NF18743_high_4
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 10003249 - 10002873
Alignment:
| Q |
18 |
ataagaagccgagttagggcgaatggaccctctcatgtgtaatttgcacatgagagattaagttgagatctctcaccattcaaactcattctatctaaat |
117 |
Q |
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| T |
10003249 |
ataagaagttgagttagggcaaatggaccctctcatgtgtaatttgcagatgagagatgaagttgagatctcccaccattcaaactcattctatctaaat |
10003150 |
T |
|
| Q |
118 |
ttcacatgtgt-----gaattgtttgagctcgtactttactctctgatgtgtaaattacacatgagaggatccgttcatgtgaggttggggagccaaaca |
212 |
Q |
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| T |
10003149 |
tttacatgtgtttctcgaattgtgagaggtcgttatttactctctgatgcgtaaattacacatgagatgatctgttcatgtgaggttggggagccaaacg |
10003050 |
T |
|
| Q |
213 |
gagagactgtttccaatatttaaacctgtcacctcgaggttacaaaccaaaaaccttaccattgcgctaatgctcaccc----ttagaaccttgatttaa |
308 |
Q |
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| T |
10003049 |
gagagactgtttccaatatttaaacctgtcacctcgaggttacaaaccaaaaaccttaccattgtgctaacgctcacccttaattagaaccttgatttaa |
10002950 |
T |
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| Q |
309 |
ttagtccaaattaaactcggattgatatctgatgtggaaagaatgtttctaagtattgagatatgccattttcatta |
385 |
Q |
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| T |
10002949 |
ttggtccaaattaagttcggattgatatctgatgtgcagcggatgtttctaagtattgagatatgccattttcatta |
10002873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 443 - 685
Target Start/End: Complemental strand, 10002478 - 10002236
Alignment:
| Q |
443 |
taaacatagttagagttttgaaatacaaatgtaaaatcattcatcttttgacatatctttcatatgcagaattaaacaaaaaaccagatgcatgttcaat |
542 |
Q |
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| T |
10002478 |
taaacatagttagtgttttgaaatacaaatgtaagattattcatctttccacgtatctttcatatgcagaattaaacagaaaaccagatgcgtgttcaat |
10002379 |
T |
|
| Q |
543 |
ttgtgaggaatatactactgagattcttgattatctaaaggataacaagactcaggcaaagatcattgatgaccttcataatacttgccatcagcttccg |
642 |
Q |
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| T |
10002378 |
ttgtgaggaatatactactgagattcttgattatctaaaggataacaagactcaggcaaagatcattgatgaccttcataatacttgccatcagcttccg |
10002279 |
T |
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| Q |
643 |
gctttcagcgagcaggtttgtctcctttgcttgattctatttt |
685 |
Q |
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| T |
10002278 |
gctttcagcgagcaggtttgtctcctttgcttgattatatttt |
10002236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 26993305 - 26993420
Alignment:
| Q |
525 |
accagatgcatgttcaatttgtgaggaatatactactgagattcttgattatctaaaggataacaagactcaggcaaagatcattgatgaccttcataat |
624 |
Q |
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| T |
26993305 |
accagatgtgtgtgcactttgtgaggaatatactaccaaggcacttgattatataaatgaaaacaagactcagagtgagatcattgatattcttcataat |
26993404 |
T |
|
| Q |
625 |
acttgccatcagcttc |
640 |
Q |
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| T |
26993405 |
acttgtcaccagcttc |
26993420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 3229154 - 3229095
Alignment:
| Q |
38 |
gaatggaccctctcatgtgtaatttgcacatgagagattaagttgagatctctcaccatt |
97 |
Q |
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| T |
3229154 |
gaatggatcctctcatgtgtaatttacacatgagagaataaagtgtgatctctaaccatt |
3229095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 3229111 - 3229150
Alignment:
| Q |
146 |
actttactctctgatgtgtaaattacacatgagaggatcc |
185 |
Q |
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| T |
3229111 |
actttattctctcatgtgtaaattacacatgagaggatcc |
3229150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 3238358 - 3238316
Alignment:
| Q |
38 |
gaatggaccctctcatgtgtaatttgcacatgagagattaagt |
80 |
Q |
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| T |
3238358 |
gaatggatcctctcatgtgtaatttacacatgagagaataagt |
3238316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 3238322 - 3238354
Alignment:
| Q |
153 |
tctctgatgtgtaaattacacatgagaggatcc |
185 |
Q |
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| T |
3238322 |
tctctcatgtgtaaattacacatgagaggatcc |
3238354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 52801520 - 52801575
Alignment:
| Q |
47 |
ctctcatgtgtaatttgcacatgagagattaagttgagatctctcaccattcaaac |
102 |
Q |
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| T |
52801520 |
ctctcatatgtaatttacacatgagagaataaatggcgatctctcaccattcaaac |
52801575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 14447082 - 14447050
Alignment:
| Q |
146 |
actttactctctgatgtgtaaattacacatgag |
178 |
Q |
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| T |
14447082 |
actttactctctcatgtgtaaattacacatgag |
14447050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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