View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_high_46 (Length: 237)
Name: NF18743_high_46
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 1472669 - 1472884
Alignment:
| Q |
18 |
atgatctttataactatagtatatgaaaacattttgtcatagacagaaaattctatcatgtttgtttaacaactatcccctagcacaatgaataaaggta |
117 |
Q |
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| T |
1472669 |
atgatctttataactatagtatatgaaaacatgttgtcatagacagaaaattctatcatgtttgtttaacaactatcccctagcacaatggataaaggta |
1472768 |
T |
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| Q |
118 |
tacttactc------nnnnnnnctattaaggatcaaaatccaaataaaatgaaactatagggattaatggtttattttcccttatttctgttatggaaga |
211 |
Q |
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| T |
1472769 |
tacttactcaaaaaaaaaaaaactattaaggatcaaaatccaaataaaatgaaactatagggattaattgtttattttcccttatttctgttatggaaga |
1472868 |
T |
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| Q |
212 |
tgtgttttcctatgct |
227 |
Q |
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|||||||||||||||| |
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| T |
1472869 |
tgtgttttcctatgct |
1472884 |
T |
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