View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_high_5 (Length: 611)
Name: NF18743_high_5
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 24)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 2 - 594
Target Start/End: Complemental strand, 7458668 - 7458076
Alignment:
| Q |
2 |
gtgggtagattatactgttgaaatgtcagctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttac |
101 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458668 |
gtggggagattatgctgttgaaatgtctgctgttgtttacaaggattggaatttcaccgagcaaggacttcctaatgatctaatcaaaaggtaaccttac |
7458569 |
T |
|
| Q |
102 |
aaaaccatacatcttgggtcggtccannnnnnnaaaaagatattgatctaaaacatannnnnnnaatgttcatgaggtgccatctaagattctcagtggt |
201 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458568 |
aaaaccgtacatcttgggtcggtccatttttttaaaaagatattgatctaaaacatatttttttaatgttcatgaggtgccatctaagattctcagtggt |
7458469 |
T |
|
| Q |
202 |
aataactacaaatcaatgaagtaacgccctaataacaaactctaactaacttttatatttctattaaacagacttgtatctcctctaaaacagttgtaaa |
301 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458468 |
aataactacaaatcaacgaagtaacgccctaataacaaactctaactaacttttatatttctattaaacagacttgtatctcctctaaaacagttgtaaa |
7458369 |
T |
|
| Q |
302 |
atgatcattagtatcactttaaataataattttatcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgact |
401 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458368 |
atgatcattagtatcactttaagtaataattttatcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgact |
7458269 |
T |
|
| Q |
402 |
tctgatagaggactatccatatgcttctgatggactagaaatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgat |
501 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458268 |
tctgatagaggactatccttatgcttctgatggactagagatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgat |
7458169 |
T |
|
| Q |
502 |
gcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458168 |
gcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
7458076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 2 - 594
Target Start/End: Complemental strand, 7471070 - 7470478
Alignment:
| Q |
2 |
gtgggtagattatactgttgaaatgtcagctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttac |
101 |
Q |
| |
|
||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7471070 |
gtggggagattatgctgtcgaaatgtctgctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttac |
7470971 |
T |
|
| Q |
102 |
aaaaccatacatcttgggtcggtccannnnnnnaaaaagatattgatctaaaacatannnnnnnaatgttcatgaggtgccatctaagattctcagtggt |
201 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7470970 |
aaaaccgtacatcttgggtcggtccatttttttaaaaagatattgatctaaaacatatttttttaatattcatgaggtgccatctaagattctcagtggt |
7470871 |
T |
|
| Q |
202 |
aataactacaaatcaatgaagtaacgccctaataacaaactctaactaacttttatatttctattaaacagacttgtatctcctctaaaacagttgtaaa |
301 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7470870 |
aataactacaaatcaacgaagtaacgccctaataacaaactttaaccaacttttatatttctattaaacagacttgtatcttctctaaaacagttgtaaa |
7470771 |
T |
|
| Q |
302 |
atgatcattagtatcactttaaataataattttatcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgact |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7470770 |
atgatcattagtatcactttaaataataattttatcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgact |
7470671 |
T |
|
| Q |
402 |
tctgatagaggactatccatatgcttctgatggactagaaatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgat |
501 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7470670 |
tctgatagaggactatccttatgtttctgatggactagagatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgat |
7470571 |
T |
|
| Q |
502 |
gcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7470570 |
gcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
7470478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 334 - 594
Target Start/End: Complemental strand, 6331147 - 6330887
Alignment:
| Q |
334 |
tatcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatg |
433 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||| |||||||| |||| |||||||| |||| ||||||||||||||||| || |||||| |||||| |
|
|
| T |
6331147 |
tatcttccttgcttgttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatg |
6331048 |
T |
|
| Q |
434 |
gactagaaatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagc |
533 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||| ||| ||||| | ||||| | ||||||||||||| ||||| |
|
|
| T |
6331047 |
gactagagatatgggatgctatcaagtcatgggttgaagaatatgtgagtttctactacacgtcagatgctgctgttgcgcaagattctgaactgcaagc |
6330948 |
T |
|
| Q |
534 |
attttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| || | |||||| |||||||||||| |
|
|
| T |
6330947 |
attttggagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggttt |
6330887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 334 - 594
Target Start/End: Complemental strand, 6320687 - 6320425
Alignment:
| Q |
334 |
tatcttccttgcatgtta-at-tagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctga |
431 |
Q |
| |
|
||||||||||||||| || || |||||||||||| ||| |||||||| |||| |||||||| |||| ||||||||||||||||| || |||||| |||| |
|
|
| T |
6320687 |
tatcttccttgcatgctatatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctga |
6320588 |
T |
|
| Q |
432 |
tggactagaaatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaa |
531 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||| | ||||| | ||||||||||||| ||| |
|
|
| T |
6320587 |
tggactagagatatgggatgctatcaagtcatgggttgaagaatatgtgaatttctactacaagtcagatgttgctgttgcgcaagattctgaactgcaa |
6320488 |
T |
|
| Q |
532 |
gcattttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| || | |||||| |||||||||||| |
|
|
| T |
6320487 |
gcattttggagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggttt |
6320425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 354 - 594
Target Start/End: Complemental strand, 6362460 - 6362220
Alignment:
| Q |
354 |
tagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatggactagaaatatgggctgct |
453 |
Q |
| |
|
|||||||||||| ||| |||| || |||| || ||||| |||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
6362460 |
tagaggagtggccgttgaggaccctacttcagcatatggtcttcgacttctaatagaggactacccttatgcttcagatggactagaaatatgggctgct |
6362361 |
T |
|
| Q |
454 |
attaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtag |
553 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| |||||| | ||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6362360 |
attaaatcatgggttgatgaatatgtcaatttctactacaagtcagatgcatctattgcacaagattctgaactccaagcattctggaaagaacttgtag |
6362261 |
T |
|
| Q |
554 |
aggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
|||| |||||||||||||| | |||||| |||||||||||| |
|
|
| T |
6362260 |
aggtcggtcatggtgacttgaagaatgctacatggtggttt |
6362220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 336 - 594
Target Start/End: Complemental strand, 6351593 - 6351335
Alignment:
| Q |
336 |
tcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatgga |
435 |
Q |
| |
|
|||||||||| ||||| |||||||||| || ||| |||||||||| ||||| ||| | || |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
6351593 |
tcttccttgcttgttatttagaggagtagctgttgaggatccagcctctcctaccggtctccgccttctgatagaggattatccttatgcttctgatgga |
6351494 |
T |
|
| Q |
436 |
ctagaaatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcat |
535 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| | ||| ||||| ||||||||||||||| |
|
|
| T |
6351493 |
ctagaaatatgggctgccattaagtcatgggttggtgaatatgtgaatttctattacaagtctgatgctgccattgcacaagatgctgaactccaagcat |
6351394 |
T |
|
| Q |
536 |
tttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
| ||||| |||||||||||||| |||||||||||| | | |||||| |||||||||||| |
|
|
| T |
6351393 |
tctggaaggaacttgtagaggttggtcatggtgacctgaagaatgccacatggtggttt |
6351335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 354 - 572
Target Start/End: Complemental strand, 6273786 - 6273568
Alignment:
| Q |
354 |
tagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatggactagaaatatgggctgct |
453 |
Q |
| |
|
|||||||||||| ||| |||||||| ||| ||||| || |||| ||||||||||||||||| || |||||| |||||||| |||| |||||||||| | |
|
|
| T |
6273786 |
tagaggagtggctgttaaggatccaagttccccacacggccttcgccttctgatagaggactacccttatgctgctgatggattagagatatgggctgtt |
6273687 |
T |
|
| Q |
454 |
attaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtag |
553 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6273686 |
attaagtcatgggttgaagaatatgtgaatttctactacaagtcagatgcaaatattggacaagattctgaactccaagcattttggaaagaacttgtag |
6273587 |
T |
|
| Q |
554 |
aggtgggtcatggtgactt |
572 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
6273586 |
aggttggtcacggtgactt |
6273568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 328 - 571
Target Start/End: Complemental strand, 6390240 - 6389997
Alignment:
| Q |
328 |
taattttatcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgctt |
427 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||| ||||| ||| |||||||| |||||||||||| | || |||||||||||||| |||||||||||| |
|
|
| T |
6390240 |
taatattatcttccttgcttgttatctagaggtgtggctgttaaggatccaaaatctccacatggtctgcgtcttctgatagaggattatccatatgctg |
6390141 |
T |
|
| Q |
428 |
ctgatggactagaaatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaact |
527 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| | ||| ||||| |
|
|
| T |
6390140 |
ttgatggactagagatatgggctgctattaagtcatgggttgatgaatatgtcaatttctactacaagtcagataaagatgttaaagatgatgaggaact |
6390041 |
T |
|
| Q |
528 |
ccaagcattttggaaagaacttgtagaggtgggtcatggtgact |
571 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6390040 |
caaagcattttggaaagaacttgtagaagtgggtcatggtgact |
6389997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 335 - 594
Target Start/End: Complemental strand, 6409485 - 6409226
Alignment:
| Q |
335 |
atcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatgg |
434 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||| |||||||| | ||||||||||||||| ||| |||||||||| ||||| |||||| ||||||| |
|
|
| T |
6409485 |
atcttccttgcttgttatctagaggagtggctgttaaggatccaaaatttccacatggtgttcgccttttgatagaggattatccttatgctactgatgg |
6409386 |
T |
|
| Q |
435 |
actagaaatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagca |
534 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||| ||||| | ||||| || ||||||||| |
|
|
| T |
6409385 |
attagagatatgggctgctattaagtcatgggttgaagaatatgtaaatttctattacaagctagatgcagctgttgcagatgattccgagctccaagca |
6409286 |
T |
|
| Q |
535 |
ttttggaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||||| | | ||||||||||||||||| |
|
|
| T |
6409285 |
ttctggaaagaacttgtagaagtgggccatggtgacttgaaggatgcaacatggtggttt |
6409226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 355 - 594
Target Start/End: Complemental strand, 6423491 - 6423252
Alignment:
| Q |
355 |
agaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatggactagaaatatgggctgcta |
454 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||| || |||| ||| |||| ||||| ||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
6423491 |
agaggagtggctgttgaggatccagcttcaccacacggcattcgccttttgattgaggattatccttatgcttcggatggactagagatatgggctgcta |
6423392 |
T |
|
| Q |
455 |
ttaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtaga |
554 |
Q |
| |
|
| ||| ||||||||| |||||||||| |||||||||||| || ||||| | ||| ||||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6423391 |
tcaagacatgggttggagaatatgtgagtttctactacaaatcagatgctgccattgcacaagatgctgaactccaagcattctggaaggaacttgtaga |
6423292 |
T |
|
| Q |
555 |
ggtgggtcatggtgactttaggaatgcaacatggtggttt |
594 |
Q |
| |
|
|||||||||||||||||| | || ||| |||||||||||| |
|
|
| T |
6423291 |
ggtgggtcatggtgacttaaagagtgccacatggtggttt |
6423252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 354 - 572
Target Start/End: Complemental strand, 6288037 - 6287819
Alignment:
| Q |
354 |
tagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatggactagaaatatgggctgct |
453 |
Q |
| |
|
|||||||||||| ||| |||||||| |||| ||||| || |||| ||||||||| | || || || |||||| |||||||| |||| |||||| | || |
|
|
| T |
6288037 |
tagaggagtggctgttgaggatccaacttccccacacggccttcgccttctgataaaagattacccttatgctgctgatggattagagatatggacagca |
6287938 |
T |
|
| Q |
454 |
attaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtag |
553 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| |||||| || ||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6287937 |
attaagtcatgggttgaagaatatgtgtatttctactacaagtcagatgcaaatattgcacaagattctgaactccaagcattctggaaagaacttgtag |
6287838 |
T |
|
| Q |
554 |
aggtgggtcatggtgactt |
572 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
6287837 |
aggtaggtcacggtgactt |
6287819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 380 - 572
Target Start/End: Complemental strand, 6369206 - 6369014
Alignment:
| Q |
380 |
cttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatggactagaaatatgggctgctattaagtcatgggttgatgaatatgt |
479 |
Q |
| |
|
|||| ||||||||| | || |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6369206 |
cttccccacatggtctgcgtcttctgatagaggattatccatatgcttcagatggactagagatatgggctgctattaagtcatgggttgatgaatatgt |
6369107 |
T |
|
| Q |
480 |
gaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtgactt |
572 |
Q |
| |
|
|||||||| ||| |||| ||| ||||||| | ||| |||||| ||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
6369106 |
caatttctattacgagtcagataaagatgttaaagatgatgaggaactcaaagcattttggaaagaacttgtagaagtaggtcatggtgactt |
6369014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 6351826 - 6351745
Alignment:
| Q |
21 |
gaaatgtcagctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttaca |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
6351826 |
gaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttaca |
6351745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 6362759 - 6362663
Alignment:
| Q |
21 |
gaaatgtcagctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttacaaaaccatacatcttg |
117 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6362759 |
gaaatgtcttctgtcgtttacaaggattgggttttcactgagcaaggcctacctaatgatctaatcaaaaggtaaccttacaaaacattacatcttg |
6362663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 467
Target Start/End: Complemental strand, 6449983 - 6449911
Alignment:
| Q |
395 |
ttcgacttctgatagaggactatccatatgcttctgatggactagaaatatgggctgctattaagtcatgggt |
467 |
Q |
| |
|
|||||||| ||||||||||||| || |||||| |||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
6449983 |
ttcgacttgtgatagaggactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggt |
6449911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 6351681 - 6351629
Alignment:
| Q |
279 |
atctcctctaaaacagttgtaaaatgatcattagtatcactttaaataataat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
6351681 |
atctcctctaaaacagttgtaaaatgatcattaaaatcactttaattaataat |
6351629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 6409747 - 6409677
Alignment:
| Q |
35 |
tgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttacaaaa |
105 |
Q |
| |
|
|||||||||||||||| |||| | || |||| ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
6409747 |
tgtttacaaggattgggttttcccggatcaagcactacctaatgatctaatcaaaaggtaagcttacaaaa |
6409677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 6390541 - 6390473
Alignment:
| Q |
36 |
gtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttacaaa |
104 |
Q |
| |
|
||||||||||||||| |||| || |||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
6390541 |
gtttacaaggattgggttttccaagatcaaggactacctaatgatctaatcaaaaggtgaccttacaaa |
6390473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 6369607 - 6369544
Alignment:
| Q |
21 |
gaaatgtcagctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaa |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| |
|
|
| T |
6369607 |
gaaatgtcagctgttgtttacaaggattgggttttcgctgaagaaggactacctactgatctaa |
6369544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 6456438 - 6456377
Alignment:
| Q |
407 |
tagaggactatccatatgcttctgatggactagaaatatgggctgctattaagtcatgggtt |
468 |
Q |
| |
|
|||| ||||| || |||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
6456438 |
tagaagactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggtt |
6456377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 6274067 - 6274003
Alignment:
| Q |
42 |
aaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttacaaaac |
106 |
Q |
| |
|
|||||||||||||| | |||||||| | |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
6274067 |
aaggattggaattttaaagagcaaggtttgcctaatgatctactcaaaaggtaaccttaaaaaac |
6274003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 6423670 - 6423598
Alignment:
| Q |
21 |
gaaatgtcagctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggt |
93 |
Q |
| |
|
|||||||| ||||||| || | ||||||| ||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
6423670 |
gaaatgtctgctgttgcatatagggattgggttttcactgagcaagggctacctaatgatctactcaaaaggt |
6423598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 11381940 - 11381977
Alignment:
| Q |
294 |
gttgtaaaatgatcattagtatcactttaaataataat |
331 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
11381940 |
gttgtaaaataatcattagtatcactttaattaataat |
11381977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 7328239 - 7328271
Alignment:
| Q |
235 |
aacaaactctaactaacttttatatttctatta |
267 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
7328239 |
aacaaactctaactaacttctatatttctatta |
7328271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 467
Target Start/End: Original strand, 9605992 - 9606105
Alignment:
| Q |
354 |
tagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccatatgcttctgatggactagaaatatgggctgct |
453 |
Q |
| |
|
||||||| | || ||| |||||||| | ||||||||||| |||| ||| |||| |||||||| || ||||| ||||||||| || ||||||| |||| |
|
|
| T |
9605992 |
tagaggattagccgttgaggatccatcgtctccacatggccttcgtcttgtgatcgaggactacccttatgcagttgatggactcgagatatgggatgct |
9606091 |
T |
|
| Q |
454 |
attaagtcatgggt |
467 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9606092 |
attaagtcatgggt |
9606105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 569
Target Start/End: Complemental strand, 42692342 - 42692288
Alignment:
| Q |
515 |
aagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtga |
569 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
42692342 |
aagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtga |
42692288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 52451827 - 52451790
Alignment:
| Q |
294 |
gttgtaaaatgatcattagtatcactttaaataataat |
331 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
52451827 |
gttgtaaaatgatcattagtatcattttaattaataat |
52451790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 10482036 - 10482076
Alignment:
| Q |
291 |
acagttgtaaaatgatcattagtatcactttaaataataat |
331 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
10482036 |
acagttgtaaaataatcattagtataactttaattaataat |
10482076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 39473954 - 39473918
Alignment:
| Q |
294 |
gttgtaaaatgatcattagtatcactttaaataataa |
330 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
39473954 |
gttgtaaaatgaccattagtatcactttaattaataa |
39473918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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