View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_low_1 (Length: 833)
Name: NF18743_low_1
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 745; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 1 - 821
Target Start/End: Original strand, 6185937 - 6186757
Alignment:
| Q |
1 |
cttagtaccatctctgctgctcctttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6185937 |
cttagtaccatctcggctgctcctttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaag |
6186036 |
T |
|
| Q |
101 |
tctcaacttgaataatagaacaactttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186037 |
tctcaacttgaataatagaacaactttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcc |
6186136 |
T |
|
| Q |
201 |
tgaaaactcaaattcagaatccgaacctgttttcgatttgtgaacatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186137 |
tgaaaactcaaattcagaatccgaacctgttttcgatttgtgagcatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatgga |
6186236 |
T |
|
| Q |
301 |
tcaacattggaatatgcacctccttccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgtacctattacaaatcaca |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186237 |
tcaacattggaatatgcaccttcttccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgtacctattacaaatcaca |
6186336 |
T |
|
| Q |
401 |
gaatcaaaagtaagattcttgttacaaaataaataatcacttttgaaaacagcttttaaagaatcaagtatttttcaatagtacctgttttgtcggtaca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
6186337 |
gaatcaaaagtaagattcttgttacaaaataaataatcacttttgaaaacagcttttaaagaatcaagtttttttcaatagtacctgttttgtcggtgca |
6186436 |
T |
|
| Q |
501 |
aatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186437 |
aatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttcatcagccatcattttcttcattgaatatgcaagtgtcaatgtc |
6186536 |
T |
|
| Q |
601 |
acagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataatcgcattcatcacatcgtcgaaactagtct |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||| |
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|
| T |
6186537 |
acagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataattgcattcatcacatcatcaaaactcgtct |
6186636 |
T |
|
| Q |
701 |
ttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaacc |
800 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||| ||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
6186637 |
ttctaccattgaattctctaactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaacc |
6186736 |
T |
|
| Q |
801 |
aacttttccgatcgatgatgt |
821 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6186737 |
aacttttccgatcgatgatgt |
6186757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 4236844 - 4237226
Alignment:
| Q |
1 |
cttagtaccatctctgctgctcctttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4236844 |
cttagtaccatctctgctgctcctttccaatgtgaaatagtttggttgtcaacattccttctcaacaatactccacttcttttcttctttgagttgaaag |
4236943 |
T |
|
| Q |
101 |
tctcaacttgaataatagaacaactttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4236944 |
tctcaacttgaagaatagaacaactttttgtcaagttctccatatccattttcaattccaaaacagcccaagatagtattgctttttctgttggactacc |
4237043 |
T |
|
| Q |
201 |
tgaaaactcaaattcagaatccgaacctgttttcgatttgtgaacatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatgga |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
4237044 |
agaaaactcaaattcagaatcagaacctgatttcaatttgtgaacaccaccagttgtattgagagaaactccttctttgatcaattgaagaacaaatgga |
4237143 |
T |
|
| Q |
301 |
tcaacattggaatatgcacctccttccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgt |
383 |
Q |
| |
|
|||||||| ||||||| ||| |||||| |||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
4237144 |
tcaacatttgaatatgtaccaacttccattggttctaaaccaagccaaaactttgtcaccttcatttgattcatagtgagtgt |
4237226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 477 - 821
Target Start/End: Original strand, 4243357 - 4243701
Alignment:
| Q |
477 |
aatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttc |
576 |
Q |
| |
|
|||||||||||| || || || |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4243357 |
aatagtacctgtcttatcagtgcaaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttc |
4243456 |
T |
|
| Q |
577 |
attgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataatcgcat |
676 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4243457 |
attgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcat |
4243556 |
T |
|
| Q |
677 |
tcatcacatcgtcgaaactagtctttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaa |
776 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | |
|
|
| T |
4243557 |
tcatcacatcatcgaaactagtctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaag |
4243656 |
T |
|
| Q |
777 |
gactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
821 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||||| || ||||| |
|
|
| T |
4243657 |
gactaaaaatgcgacagccaaaccaacctttccgattgaggatgt |
4243701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 8e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 21847695 - 21847841
Alignment:
| Q |
1 |
cttagtaccatctctgctgctcctttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21847695 |
cttagtaccatctctgcttctcctttccaatgtacagtagttttgctgtcgacattccttctcaacaaaactccacttcttttcttctttgagttgaaag |
21847794 |
T |
|
| Q |
101 |
tctcaacttgaataatagaacaactttttgtcaagtgctccatatcc |
147 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| | ||||||||||||| |
|
|
| T |
21847795 |
tctcaacttgaataatagaataaccttttgttaggtgctccatatcc |
21847841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 644
Target Start/End: Original strand, 38358065 - 38358195
Alignment:
| Q |
514 |
gatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggca |
613 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||| || ||||| ||||||||| | ||||| || || ||||| || | ||||||||| ||||||| |
|
|
| T |
38358065 |
gatcccatagtttcacaagctgaaagtttcctcaccatagcatgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatggca |
38358164 |
T |
|
| Q |
614 |
aaccctcaggaattgcaacaacaacaatagt |
644 |
Q |
| |
|
|||||||||| || ||||| || |||||||| |
|
|
| T |
38358165 |
aaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 651
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
593 |
tcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagca |
651 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 625
Target Start/End: Original strand, 39951669 - 39951730
Alignment:
| Q |
564 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
625 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
39951730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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